View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13099_high_6 (Length: 465)
Name: NF13099_high_6
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_high_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 120 - 465
Target Start/End: Complemental strand, 28465877 - 28465533
Alignment:
| Q |
120 |
atgagataggtttgttttcatattaatattaatatactcctagtgtttagttttttcccctaaacttagcaatcatagaagttgtgnnnnnnntgcataa |
219 |
Q |
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| T |
28465877 |
atgagataggtttgttttcatattaatattaatatactcctagtgtttagttttttcccctaaacttagcaatcatagaagttgtgaaaaaaatgcataa |
28465778 |
T |
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| Q |
220 |
agcatgggtaagaatgagatgcatgacattgacagaatgctatcaccatcgttgagcgttgagctttaaaagatactctcatgacactgcatatatctca |
319 |
Q |
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| T |
28465777 |
agcatgggtaagaatgagatgcatgacattgacagaatgctatcaccatcgttgagcgttgagctttaaaagatactctcatgacactgcatatatctca |
28465678 |
T |
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| Q |
320 |
tgtgcaaaccattattaacaaacctgtcattttattttattttgaaaaagtcagnnnnnnnnnagggtgggatttggaggatcctagagaatctgtttgc |
419 |
Q |
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| T |
28465677 |
tgtgcaaaccattattaataaacctgtcattttattttattttgaaaaagtcag-ttttttttagggtgggatttggaggatcctagagaatctgtttgc |
28465579 |
T |
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| Q |
420 |
catggttattagaaaaaagtggagtttagggtaaataagcagaaca |
465 |
Q |
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| T |
28465578 |
catggttattagaaaaaagtggagtttagggtaaataagaagaaca |
28465533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 28465985 - 28465952
Alignment:
| Q |
12 |
atagtagtaattttttggacttatagtttgtctc |
45 |
Q |
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| T |
28465985 |
atagtagtaattttttggacttatagtttgtctc |
28465952 |
T |
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