View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13099_high_8 (Length: 429)
Name: NF13099_high_8
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 15632959 - 15632565
Alignment:
| Q |
19 |
cgaccaccaggtagttgacttgtcccatagcttttgggaatggtcccaatagatcgattccacaccaagagaacggccatggtgaagcgaatgacattaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
15632959 |
cgaccaccaggtagttgacttgtcccatagctttggggaatggtcccgatagaccgattccacaccaagcaaacggccatggtgaagcgaatgatgttaa |
15632860 |
T |
|
| Q |
119 |
ctcggttggaggagctatgtgcatgtccccatgtttctggaatctgtggcattacataaacccaaaccattaccatcataaattagtcaaatattggata |
218 |
Q |
| |
|
||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15632859 |
ctcagctggaggagctatgtgcatgtccctatgtttctggaatctgtggcattacataaacccaaaccattaccatcataaattagtcaaatattggata |
15632760 |
T |
|
| Q |
219 |
aattactagggcaatacaaaccaagctgcatatactgatataccaca------gacaggatgcccgactccgaccaatctccctcccttgctctcatcga |
312 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15632759 |
aattactagggcaatacaaaccaagcagcatatactgatataccacagacacagacaggatgcccgactccgaccaatctccctcccttgctctcatcga |
15632660 |
T |
|
| Q |
313 |
cgcataccctcaaataactccctctcatgctctcctcgtcctcgacaccctcttaatcaagatcttcgatgtctacttctttactgaagcttgta |
407 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15632659 |
cgcatagcctcaaataactccctctcatgctctcctcgtcctcgacaccctcttaatcaagatcttcgatgtctacttctttactggagcttgta |
15632565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University