View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13099_low_13 (Length: 336)
Name: NF13099_low_13
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_low_13 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0182 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 28324 - 28619
Alignment:
| Q |
18 |
gttgatgcagccacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28324 |
gttgatgcagccacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatca |
28423 |
T |
|
| Q |
118 |
gaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28424 |
gaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctt |
28509 |
T |
|
| Q |
218 |
tcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28510 |
tcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctg |
28609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 26396039 - 26396334
Alignment:
| Q |
19 |
ttgatgcagccacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcag |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396039 |
ttgatgcagcgacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcag |
26396138 |
T |
|
| Q |
119 |
aaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctcttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396139 |
aaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctcttt |
26396224 |
T |
|
| Q |
219 |
cgacctctttcaatgccgctctttattc-ttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396225 |
cgacctctttcaatgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctg |
26396324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 26460430 - 26460346
Alignment:
| Q |
211 |
ttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
295 |
Q |
| |
|
||||||| |||||||| ||||| || ||||| ||||||||||| || |||||||| |||| || ||||||||||| |||||| |
|
|
| T |
26460430 |
ttctcttacgacctctctcaatcccactcttgattcttttcggagctccttttgtgtttgctggtttaggatcaagtaatttctt |
26460346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 30 - 327
Target Start/End: Original strand, 275446 - 275729
Alignment:
| Q |
30 |
acaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgtta |
129 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275446 |
acaacttcatcagcgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgtta |
275545 |
T |
|
| Q |
130 |
aataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttc |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275546 |
aataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttc |
275631 |
T |
|
| Q |
230 |
aatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctgctatattctt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
275632 |
aatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctgctattttctt |
275729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University