View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13099_low_16 (Length: 302)
Name: NF13099_low_16
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_low_16 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 48221 - 48453
Alignment:
| Q |
8 |
cagcacagatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaatgcgaatcactccctggtatttttgtt |
107 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48221 |
cagcactgatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaaagcgaatcactccctggtatttttgtt |
48320 |
T |
|
| Q |
108 |
tggaacgctaataattctgccatgcccaataacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
207 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48321 |
tggaacgctaatgattctgccatgccctccaacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
48420 |
T |
|
| Q |
208 |
acaattacaacaaactacactacgttggtacctc |
241 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |
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| T |
48421 |
ac-attacaacaaactacactacgttggtacctc |
48453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 60760 - 60992
Alignment:
| Q |
8 |
cagcacagatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaatgcgaatcactccctggtatttttgtt |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
60760 |
cagcactgatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaaagcgaatcactccctggtatttttgtt |
60859 |
T |
|
| Q |
108 |
tggaacgctaataattctgccatgcccaataacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
207 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60860 |
tggaacgctaatgattctgccatgccctccaacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
60959 |
T |
|
| Q |
208 |
acaattacaacaaactacactacgttggtacctc |
241 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |
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| T |
60960 |
ac-attacaacaaactacactacgttggtacctc |
60992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 72879 - 73111
Alignment:
| Q |
8 |
cagcacagatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaatgcgaatcactccctggtatttttgtt |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
72879 |
cagcactgatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaaagcgaatcactccctggtatttttgtt |
72978 |
T |
|
| Q |
108 |
tggaacgctaataattctgccatgcccaataacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
207 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
72979 |
tggaacgctaatgattctgccatgccctccaacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
73078 |
T |
|
| Q |
208 |
acaattacaacaaactacactacgttggtacctc |
241 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |
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| T |
73079 |
ac-attacaacaaactacactacgttggtacctc |
73111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 18691570 - 18691802
Alignment:
| Q |
8 |
cagcacagatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaatgcgaatcactccctggtatttttgtt |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18691570 |
cagcactgatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaaagcgaatcactccctggtatttttgtt |
18691669 |
T |
|
| Q |
108 |
tggaacgctaataattctgccatgcccaataacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
207 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691670 |
tggaacgctaatgattctgccatgccctccaacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
18691769 |
T |
|
| Q |
208 |
acaattacaacaaactacactacgttggtacctc |
241 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |
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| T |
18691770 |
ac-attacaacaaactacactacgttggtacctc |
18691802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 15699309 - 15699541
Alignment:
| Q |
8 |
cagcacagatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaatgcgaatcactccctggtatttttgtt |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15699309 |
cagcactgatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaaagcgaatcactccctggtatttttgtt |
15699408 |
T |
|
| Q |
108 |
tggaacgctaataattctgccatgcccaataacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
207 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15699409 |
tggaacgctaatgattctgccatgccctccaacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
15699508 |
T |
|
| Q |
208 |
acaattacaacaaactacactacgttggtacctc |
241 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |
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|
| T |
15699509 |
ac-attacaacaaactacactacgttggtacctc |
15699541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 15711848 - 15712080
Alignment:
| Q |
8 |
cagcacagatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaatgcgaatcactccctggtatttttgtt |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15711848 |
cagcactgatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaaagcgaatcactccctggtatttttgtt |
15711947 |
T |
|
| Q |
108 |
tggaacgctaataattctgccatgcccaataacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
207 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15711948 |
tggaacgctaatgattctgccatgccctccaacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
15712047 |
T |
|
| Q |
208 |
acaattacaacaaactacactacgttggtacctc |
241 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |
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| T |
15712048 |
ac-attacaacaaactacactacgttggtacctc |
15712080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 15724326 - 15724558
Alignment:
| Q |
8 |
cagcacagatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaatgcgaatcactccctggtatttttgtt |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
15724326 |
cagcactgatccagatagtaacactaacatgacacgagatgtcttcattaagggttgcaaatccctcctcgaaagcgaatcactccctggtatttttgtt |
15724425 |
T |
|
| Q |
108 |
tggaacgctaataattctgccatgcccaataacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
207 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15724426 |
tggaacgctaatgattctgccatgccctccaacgaagacaatactccttacttcctagaggaagtcctacaagacctccttactgataattgaatgaatc |
15724525 |
T |
|
| Q |
208 |
acaattacaacaaactacactacgttggtacctc |
241 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |
|
|
| T |
15724526 |
ac-attacaacaaactacactacgttggtacctc |
15724558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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