View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13099_low_17 (Length: 275)
Name: NF13099_low_17
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_low_17 |
 | |
|
| [»] scaffold0062 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] scaffold0443 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0062 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 47889 - 48146
Alignment:
| Q |
18 |
agcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
117 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47889 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
47988 |
T |
|
| Q |
118 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattgggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
47989 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
48088 |
T |
|
| Q |
218 |
caacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagc |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48089 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagc |
48146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 60428 - 60685
Alignment:
| Q |
18 |
agcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
117 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
60428 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
60527 |
T |
|
| Q |
118 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattgggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
60528 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
60627 |
T |
|
| Q |
218 |
caacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagc |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
60628 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagc |
60685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 72547 - 72804
Alignment:
| Q |
18 |
agcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
117 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
72547 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
72646 |
T |
|
| Q |
118 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattgggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
72647 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
72746 |
T |
|
| Q |
218 |
caacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagc |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
72747 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagc |
72804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 18691238 - 18691495
Alignment:
| Q |
18 |
agcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
117 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18691238 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
18691337 |
T |
|
| Q |
118 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattgggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
18691338 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
18691437 |
T |
|
| Q |
218 |
caacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagc |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18691438 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagc |
18691495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 15698977 - 15699234
Alignment:
| Q |
18 |
agcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
117 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15698977 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
15699076 |
T |
|
| Q |
118 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattgggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
15699077 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
15699176 |
T |
|
| Q |
218 |
caacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagc |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15699177 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagc |
15699234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 15711516 - 15711773
Alignment:
| Q |
18 |
agcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
117 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15711516 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
15711615 |
T |
|
| Q |
118 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattgggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
15711616 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
15711715 |
T |
|
| Q |
218 |
caacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagc |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15711716 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagc |
15711773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 15723994 - 15724251
Alignment:
| Q |
18 |
agcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
117 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15723994 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
15724093 |
T |
|
| Q |
118 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattgggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
15724094 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
15724193 |
T |
|
| Q |
218 |
caacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagc |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15724194 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagc |
15724251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 8901 - 8933
Alignment:
| Q |
44 |
cataattgatggtattgatattaactatgagta |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8901 |
cataattgatggtattgatattaactatgagta |
8933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University