View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13099_low_2 (Length: 654)
Name: NF13099_low_2
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 250 - 635
Target Start/End: Original strand, 54175197 - 54175573
Alignment:
| Q |
250 |
gttgcttgtcttcttcaacttttccattttctcattactaaactaatgcatgctgcatacttatctatttcattatatatcattgacctt-gtttaacta |
348 |
Q |
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| T |
54175197 |
gttgcttgtcttcttcaagttttccattttctcattactaaactaatgcatgctgcatacttatctatttcattatatatcattgacctttgtttaacta |
54175296 |
T |
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| Q |
349 |
atttagtttactattttttagatatgaatttttattattactgggtgtgtctggtgtttctgtttatgctcccctatttggaacaagtttattcaaatgt |
448 |
Q |
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| T |
54175297 |
atttagtttactattttt-agatatgaatttttattattactggctgtggctggtgtttctgtttatgctcccctatttggaacaagtttattcaaat-- |
54175393 |
T |
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| Q |
449 |
ctcattttcaagaccctcttttgtaaatattggtgctatcttcacctttgattcttccattggtaaagttgctaaacttgctatggaacaagccgttaaa |
548 |
Q |
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| T |
54175394 |
-------tcaagaccctcttttgtaaatattggtgctatcttcacctttgattcttccattggtaaagttgctaaacttgccatggaacaagccgttaaa |
54175486 |
T |
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| Q |
549 |
gatgtcaactccaattcctccattcttcattccactcaacttgttctccatatgcaaacttccaattgcagcggtttcgatggcatg |
635 |
Q |
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| T |
54175487 |
gatgtcaactccaattcctccattcttcattccactcaacttgttcttcatatgcaaacttccaattgcagcggtttcgatggcatg |
54175573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 54174978 - 54175090
Alignment:
| Q |
1 |
ttcccaggtgttgtttgttctcattctcaacaccaaataccatttttcactcttcagaccaaccgacataataacacttggtattggttaagcaactttg |
100 |
Q |
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| T |
54174978 |
ttcccaggtgttgtttgttctcattctcaccaccaaataccatttttcactcttcagaccaaccgacataataacacttggtattggttaagcaactttg |
54175077 |
T |
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| Q |
101 |
ttttttcctcttt |
113 |
Q |
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| T |
54175078 |
ttttttcctcttt |
54175090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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