View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13099_low_3 (Length: 540)

Name: NF13099_low_3
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13099_low_3
NF13099_low_3
[»] chr8 (3 HSPs)
chr8 (15-519)||(40948192-40948696)
chr8 (127-186)||(14111134-14111193)
chr8 (481-515)||(40948124-40948158)
[»] chr6 (3 HSPs)
chr6 (127-186)||(35240550-35240609)
chr6 (266-329)||(35240386-35240449)
chr6 (266-326)||(11423803-11423862)
[»] chr4 (1 HSPs)
chr4 (254-357)||(1962546-1962649)


Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 15 - 519
Target Start/End: Complemental strand, 40948696 - 40948192
Alignment:
Q  15 cagagcacacgataacaatcaacggagcacaatgatgacgtcagccaaagagcacacaacgacaacaccaatagatagcacgcaacaacaacgtcaactg 114  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40948696 cagagcacacgataacaatcaacggaacacaatgatgacgtcagccaaagagcacacaacgacaacaccaatagatagcacgcaacaacaacgtcaactg 40948597  T
Q  115 gtaacatgcgacggcaacatcaatatagatggtgttcactgggttgtgttgttattattgaagaagatgaaatggtttaaatgttttacaggaaagtggg 214  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40948596 gtaacacgcgacggcaacatcaatatagatggtgttcactgggttgtgttgttattattgaagaagatgaaatggtttaaatattttacaggaaagtggg 40948497  T
Q  215 tctcgtgagggaagaaggttgggaaatgaaatagacatgtgatttaattgttagccgttgattttcattaaaaggaaatgaagggctgagattgcctgac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40948496 tctcgtgagggaagaaggttgggaaatgaaatagacatgtgatttaattgttagccgttgattttcattaaaaggaaatgaagggctgagattgcctgac 40948397  T
Q  315 aggagaaaactggaggcatttacaccggagaaaatccattccccgtttagagttccaaatgtatatatatcattgtcaagtcaacatccatttgttgtca 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40948396 aggagaaaactggaggcatttacaccggagaaaatccattccccgtttagagttccaaatgtatatatatccttgtcaagtcaacatccatttgttgtca 40948297  T
Q  415 aaactagtatccaccgaaaagttatccaaactagaagataacgaactacacggaattttgcaactagtactatcattccaaacaaaagtgatatccaaaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40948296 aaactagtatccaccgaaaagttatccaaactagaagataacgaactacacggaattttgcaactagtactatcattccaaacaaaagtgatatccaaaa 40948197  T
Q  515 gttgt 519  Q
    |||||    
T  40948196 gttgt 40948192  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 14111193 - 14111134
Alignment:
Q  127 ggcaacatcaatatagatggtgttcactgggttgtgttgttattattgaagaagatgaaa 186  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14111193 ggcatcatcaatatagatggtgttcacttggtagtgttgttattattgaagaagatgaaa 14111134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 515
Target Start/End: Complemental strand, 40948158 - 40948124
Alignment:
Q  481 gtactatcattccaaacaaaagtgatatccaaaag 515  Q
    |||||||||||||||||||||||||||||||||||    
T  40948158 gtactatcattccaaacaaaagtgatatccaaaag 40948124  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 35240609 - 35240550
Alignment:
Q  127 ggcaacatcaatatagatggtgttcactgggttgtgttgttattattgaagaagatgaaa 186  Q
    |||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  35240609 ggcatcatcaatatagatggtgttcattaggtagtgttgttattattgaagaagatgaaa 35240550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 35240449 - 35240386
Alignment:
Q  266 tagccgttgattttcattaaaaggaaatgaagggctgagattgcctgacaggagaaaactggag 329  Q
    ||||| |||||||||||||||| |||||| | |||| ||||||| | |||||||||||| ||||    
T  35240449 tagccattgattttcattaaaaagaaatggaaggctcagattgcttcacaggagaaaacaggag 35240386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 11423803 - 11423862
Alignment:
Q  266 tagccgttgattttcattaaaaggaaatgaagggctgagattgcctgacaggagaaaactg 326  Q
    ||||| |||||||||||||||||| ||||||||| || |||||  | ||||||||||||||    
T  11423803 tagcctttgattttcattaaaagg-aatgaagggttgtgattgtttcacaggagaaaactg 11423862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 1962546 - 1962649
Alignment:
Q  254 tgatttaattgttagccgttgattttc-attaaaaggaaatgaagggctgagattgcctgacaggagaaaactggaggcatttacaccggagaaaatcca 352  Q
    |||||| ||| | |||||||||| ||| ||||||||||| |||||||||| ||||||   |||||||||||| ||||  ||||  || ||||| ||||||    
T  1962546 tgattttattataagccgttgatcttccattaaaaggaa-tgaagggctgtgattgctccacaggagaaaacaggagaaattttgactggagacaatcca 1962644  T
Q  353 ttccc 357  Q
    |||||    
T  1962645 ttccc 1962649  T

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