View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13099_low_5 (Length: 528)
Name: NF13099_low_5
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 172 - 498
Target Start/End: Original strand, 8248229 - 8248558
Alignment:
| Q |
172 |
ataccttaacaagctttttcagctctggaagctgtaaagctatatcatcctctcttattgaactagttgaatcatcaaaagggatgtggttacatgaggt |
271 |
Q |
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| T |
8248229 |
ataccttaacaagctttttcagctctggaagctgtaaagctatatcatcctctcttattgaacctcttaaatcatcacaagggatgtggttacatgaggt |
8248328 |
T |
|
| Q |
272 |
tgttttctgatatacccattggtctctttggtatctttgtaaagagtgtttctcagtgaaaggtgaggttgatgaagttgtgcagttgattgaggaaat- |
370 |
Q |
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| T |
8248329 |
tgttttctgataaacccattggtctctttggtatctttgtaaagagtgtttctcagtgaaaggtgaggttgatgaggttgtgcaggagattgaggaaatg |
8248428 |
T |
|
| Q |
371 |
ggggtggcgttgattgatgagaaaatggtgatttggaatgaaagatgggattttgtgaacaagagccatgtgggtt--gtttggtttgtgaagaaaatga |
468 |
Q |
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| T |
8248429 |
ggggtggtttttgttgattggaaaatggtgaattggagtgaaagatgggattttgtgaagaagagccatgtgggtttgttttggtttgtgaagaaaatga |
8248528 |
T |
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| Q |
469 |
gagaggaaattattgggtttaaattaaggt |
498 |
Q |
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| T |
8248529 |
aagaggaaattattggttttaaattaaggt |
8248558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8248058 - 8248165
Alignment:
| Q |
1 |
catcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaacagtcaacaactcaggatcaccaggtcctgttcc |
100 |
Q |
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| T |
8248058 |
catcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaacagtcaacaactcaggatcaccaggtcctgttcc |
8248157 |
T |
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| Q |
101 |
aaccaaaa |
108 |
Q |
| |
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|||||||| |
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| T |
8248158 |
aaccaaaa |
8248165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 12836228 - 12836335
Alignment:
| Q |
1 |
catcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaacagtcaacaactcaggatcaccaggtcctgttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
12836228 |
catcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaagagtcaacaattcaggatcaccaggtcctgttcc |
12836327 |
T |
|
| Q |
101 |
aaccaaaa |
108 |
Q |
| |
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|||||||| |
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| T |
12836328 |
aaccaaaa |
12836335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 172 - 382
Target Start/End: Original strand, 12836399 - 12836609
Alignment:
| Q |
172 |
ataccttaacaagctttttcagctctggaagctgtaaagctatatcatcctctcttattgaactagttgaatcatcaaaagggatgtg------gttaca |
265 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||| |||| ||||| |
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| T |
12836399 |
atacctgaacaagttttttcagctctggaagctgtaaagctatgtcatgttctctta---------ttgaatcaccaaaaggggtgtgattattattaca |
12836489 |
T |
|
| Q |
266 |
tgaggttgttttctgatatacccattggtctctttggtatctttgtaaagagtgtttctcagtgaaaggt---gaggttgatgaagttgtgcagttgatt |
362 |
Q |
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| T |
12836490 |
ggaggtggtattctggtaaacccattggtctctttggtatctttgtgtggagtatttttctgtgaagggtgaagaggtggaggatgtggtgcagttgatt |
12836589 |
T |
|
| Q |
363 |
gaggaaatggggtggcgttg |
382 |
Q |
| |
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||||||||||||| |||||| |
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| T |
12836590 |
gaggaaatggggttgcgttg |
12836609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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