View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13099_low_7 (Length: 441)
Name: NF13099_low_7
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 9186204 - 9185882
Alignment:
| Q |
16 |
gttgatgcataattcatgtccctcttttcttctttttcatattgttagctgaaaacctgaggaaaaataaatttaggaaatttcgagttttcatgtatca |
115 |
Q |
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| T |
9186204 |
gttgatgcataattcatgtccctcttttcttctttttcatattgttagctgaaaacctgaggaaaaataaatttaggaaatttagagttttcatgtatca |
9186105 |
T |
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| Q |
116 |
cttaataaacttcctcacgccttgtattatttaaatttatattgggtttaggttattcttagaaaatcaactttacaagtgaacgatgaaattctttaaa |
215 |
Q |
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| T |
9186104 |
cttaataaacttcctcacgccttgtattatttaaatttatattgggtttaggttattcttagaaaatcaacttgtaaagtgaacgatgaaattctttaaa |
9186005 |
T |
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| Q |
216 |
attctttttacactagaaatcttttcggtatgagatttagaatatgacgacttctggtggcacttggatagaatttaagaaaggggcaaagtcaattttt |
315 |
Q |
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| T |
9186004 |
attctttttacattagaaatcttttcggtatgagatttagaa-----------------gcacttggatagaatttaagaaaggggcaaagtcaattttt |
9185922 |
T |
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| Q |
316 |
tatgtgtgctatactatgtgtttttagtccacaccaccat |
355 |
Q |
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| T |
9185921 |
tatgtgtgctatactatgtgtttttaatccacaccaccat |
9185882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 9185645 - 9185591
Alignment:
| Q |
377 |
ggttagatgttattttatgtaagccagtatcaataatacttgcttgctgcctttg |
431 |
Q |
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| T |
9185645 |
ggttagatgttattttatgtaagccagtatcaatattacttgcttgctgcctttg |
9185591 |
T |
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