View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13099_low_8 (Length: 429)
Name: NF13099_low_8
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 15632959 - 15632565
Alignment:
| Q |
19 |
cgaccaccaggtagttgacttgtcccatagcttttgggaatggtcccaatagatcgattccacaccaagagaacggccatggtgaagcgaatgacattaa |
118 |
Q |
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| T |
15632959 |
cgaccaccaggtagttgacttgtcccatagctttggggaatggtcccgatagaccgattccacaccaagcaaacggccatggtgaagcgaatgatgttaa |
15632860 |
T |
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| Q |
119 |
ctcggttggaggagctatgtgcatgtccccatgtttctggaatctgtggcattacataaacccaaaccattaccatcataaattagtcaaatattggata |
218 |
Q |
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| T |
15632859 |
ctcagctggaggagctatgtgcatgtccctatgtttctggaatctgtggcattacataaacccaaaccattaccatcataaattagtcaaatattggata |
15632760 |
T |
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| Q |
219 |
aattactagggcaatacaaaccaagctgcatatactgatataccaca------gacaggatgcccgactccgaccaatctccctcccttgctctcatcga |
312 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15632759 |
aattactagggcaatacaaaccaagcagcatatactgatataccacagacacagacaggatgcccgactccgaccaatctccctcccttgctctcatcga |
15632660 |
T |
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| Q |
313 |
cgcataccctcaaataactccctctcatgctctcctcgtcctcgacaccctcttaatcaagatcttcgatgtctacttctttactgaagcttgta |
407 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15632659 |
cgcatagcctcaaataactccctctcatgctctcctcgtcctcgacaccctcttaatcaagatcttcgatgtctacttctttactggagcttgta |
15632565 |
T |
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