View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_high_15 (Length: 257)
Name: NF1309_high_15
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 31 - 253
Target Start/End: Original strand, 24528864 - 24529086
Alignment:
| Q |
31 |
acataaaagttgaagtgtattccttcaacaaaactagttagttatgaagatgatgttgtactttatgaagatgaagttgataataaaatgaagaaatatg |
130 |
Q |
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| T |
24528864 |
acataaaagttaaagtgtattccttcaacaaaactagttagttatgaagatgatgctttactttatgaagatgaagttgataataaaatgaagaaatatg |
24528963 |
T |
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| Q |
131 |
gaactttgaatgaatggaggatatgtcatgtcaaagtgggtactcaatcaagtcccacattgagtagtttgaaaaacaaaggtagatatatatcatagat |
230 |
Q |
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| T |
24528964 |
agactttgaatgaatggaggatatgtcatgtcaaagtgggtacttaatcaagtcccacattgagtagtttgaaaaacaaaggtagatatatatcatagat |
24529063 |
T |
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| Q |
231 |
aattagatatggtgatgtatatt |
253 |
Q |
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| T |
24529064 |
aattagataaggtgatgtatatt |
24529086 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 31227328 - 31227412
Alignment:
| Q |
89 |
tactttatgaagatgaagttgataataaaatgaagaaatatggaactttgaatgaatggaggatatgtcatgtcaaagtgggtact |
174 |
Q |
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| T |
31227328 |
tactttgtgacgatgaagttgataataaattgaagaaatatgagactttgtatcaa-gggggatatgatatgtcaaagagggtact |
31227412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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