View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_high_17 (Length: 252)
Name: NF1309_high_17
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 29415583 - 29415826
Alignment:
| Q |
1 |
cttgtgcattcatttaattaaaagctaaaatattaaattcaatgccagaattccaacgagacttaagggtatatatcaatgtagacatgtttacccccaa |
100 |
Q |
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| T |
29415583 |
cttgtgcattcatttaattaaaagctaaaatattaaattcaatgcaagaattccaacgagacttaagggtatatatcaatgtagacatgtttacccttaa |
29415682 |
T |
|
| Q |
101 |
atggccaaattaaatttctaaatcattccatagttaacactaatcttgtacaaaaacaactgttggtaaacatataattagaatgtgagaactaattcga |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29415683 |
atggccaaattaaatttctaaatcattccacagttaacactaatcttgtacaaaaacaattgttggtaaacatataattagaatgtgagaactaattcga |
29415782 |
T |
|
| Q |
201 |
tccttccttgctaggtactacttaactagaggtacacctatgct |
244 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29415783 |
ttcttccttgctaggtactacttaactagaggtacacctatgct |
29415826 |
T |
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