View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1309_high_2 (Length: 445)

Name: NF1309_high_2
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1309_high_2
NF1309_high_2
[»] chr6 (2 HSPs)
chr6 (9-354)||(31805325-31805669)
chr6 (86-125)||(2493426-2493465)
[»] chr8 (4 HSPs)
chr8 (212-265)||(43816826-43816879)
chr8 (212-265)||(43831730-43831783)
chr8 (212-263)||(43824768-43824819)
chr8 (86-123)||(8017494-8017531)
[»] chr4 (3 HSPs)
chr4 (86-125)||(27096013-27096052)
chr4 (85-123)||(2976701-2976739)
chr4 (85-122)||(8457932-8457969)
[»] chr2 (1 HSPs)
chr2 (89-122)||(32843724-32843757)


Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 354
Target Start/End: Complemental strand, 31805669 - 31805325
Alignment:
Q  9 agcagcaccacagacacggttacatgtatatcgaacaagacactacaatgtcgttggtcaaaatgatttgaccggtgtaataatatgataaaatgacata 108  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  31805669 agcagcaacacaaacacggttacatgtatatcgaacaagacactacaatgtcgttggttgaaataatttgaccggtgtaataatatgataaaatgacata 31805570  T
Q  109 attgaatgtaatcattatacgtcgacggtgtcagacgagaacacatagacattcgatcaaaagtatcggtgctaaagtgaagtagtaaaagattagtatt 208  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31805569 attgaatgtaatcattataa-tcgacagtgtcagacgagaacacatagacattcgatcagaagtatcggtgctaaagtgaagtagtaaaagattagtatt 31805471  T
Q  209 atttacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagtacttcccaacatccggaaacggttgtttaagaaaaatcaacaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31805470 atttacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagtacttcccaacatccggaaacggttgtttaagaaaaatcaacaa 31805371  T
Q  309 cgaaatcaaaatcaaagctaaacccatcttcgccgaaaacacaaac 354  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  31805370 cgaaatcaaaatcaaagctaaacccatcttagctgaaaacacaaac 31805325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 2493465 - 2493426
Alignment:
Q  86 taataatatgataaaatgacataattgaatgtaatcatta 125  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  2493465 taataatttgacaaaatgacataattgaatgtaatcatta 2493426  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 43816826 - 43816879
Alignment:
Q  212 tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagt 265  Q
    ||||||||||||| |||||||| || |||||||| |||||||||||||||||||    
T  43816826 tacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagt 43816879  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 43831730 - 43831783
Alignment:
Q  212 tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagt 265  Q
    ||||||||||||| |||||||| || ||||| || |||||||||||||||||||    
T  43831730 tacctatactgaattcaaagacaactacaacggtgagaatagcccaaacagagt 43831783  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 43824768 - 43824819
Alignment:
Q  212 tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacaga 263  Q
    ||||||||||||| ||||||||||| || || || |||||||||||||||||    
T  43824768 tacctatactgaattcaaagacgacgacgacggtgagaatagcccaaacaga 43824819  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 8017494 - 8017531
Alignment:
Q  86 taataatatgataaaatgacataattgaatgtaatcat 123  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  8017494 taataatatgaaaaaatgacataattgagtgtaatcat 8017531  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 27096052 - 27096013
Alignment:
Q  86 taataatatgataaaatgacataattgaatgtaatcatta 125  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  27096052 taataatttgacaaaatgacataattgaatgtaatcatta 27096013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 2976701 - 2976739
Alignment:
Q  85 gtaataatatgataaaatgacataattgaatgtaatcat 123  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  2976701 gtaataatttgagaaaatgacataattgaatgtaatcat 2976739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 8457932 - 8457969
Alignment:
Q  85 gtaataatatgataaaatgacataattgaatgtaatca 122  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  8457932 gtaataatttgagaaaatgacataattgaatgtaatca 8457969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 32843724 - 32843757
Alignment:
Q  89 taatatgataaaatgacataattgaatgtaatca 122  Q
    |||||||| |||||||||||||||||||||||||    
T  32843724 taatatgagaaaatgacataattgaatgtaatca 32843757  T

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