View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_high_4 (Length: 420)
Name: NF1309_high_4
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 51186504 - 51186917
Alignment:
| Q |
1 |
tggtttcattatctcttatacaaaaacttgctatatttctattcctctctccaaatgactgaaatttagttatttgataattgattgtcgaacctaaaat |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51186504 |
tggtttcattatctcttatacaaaa-cttgctatatttctattcctctctccaaatgactgaaatttagttatttgataattgattgtcgaacctaaaat |
51186602 |
T |
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| Q |
101 |
ataaactctgacactttatttcttttcctcgaacaacactattagcaatatttgagaattataggctgtttggtttggcg---------------ccaca |
185 |
Q |
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| T |
51186603 |
ataaactctgacactttatttcttttcctcgaacaacactattagcaatatttgagaattataggctgtttggtttggcggtggaaaagccaaacccacg |
51186702 |
T |
|
| Q |
186 |
tccaaaacatctactttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactcc |
285 |
Q |
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| T |
51186703 |
tccaaaacatctactttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactcc |
51186802 |
T |
|
| Q |
286 |
aaacactctattagtaattatattgaatcttctttttctattggcttgtttattgctattgagtgtcttagccaatttcccttggatcacttggttgcat |
385 |
Q |
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| T |
51186803 |
aaacacactattagtaattatattgaatcttctttttctattggcttgtttattgctattgagtgtcttagccaatttcccttagatcacttggttgcat |
51186902 |
T |
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| Q |
386 |
gattcactcctcctc |
400 |
Q |
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| T |
51186903 |
gattcattcctcctc |
51186917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 41739749 - 41739639
Alignment:
| Q |
181 |
ccacatccaaaacatctactttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgcc |
280 |
Q |
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|||| ||||||||| |||||||| ||||||| ||||||||||| || |||||||||| |||| |||||||||||||||| || |||||||||||||| | |
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| T |
41739749 |
ccacgtccaaaacagctactttcgtgaaaatttagaagctttgtatcatagcttttagaatactgtgattccttgccgcacgtgtgataaataaaacgtc |
41739650 |
T |
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| Q |
281 |
actccaaacac |
291 |
Q |
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||||||||||| |
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| T |
41739649 |
actccaaacac |
41739639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 51180857 - 51180958
Alignment:
| Q |
1 |
tggtttcattatctcttatacaaaaacttgctatatttctat-tcctctctccaaatgactgaaatttagttatttgataattgattgtcgaacctaaaa |
99 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||| | |||||||||||| ||||||||| |||||||||| ||| || || ||||| ||| |
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| T |
51180857 |
tggtttcattatctcttatacaaaatcttgccatatttctatgttttctctccaaatgcttgaaatttaattatttgatagttggttatcaaacctgaaa |
51180956 |
T |
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| Q |
100 |
ta |
101 |
Q |
| |
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|| |
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|
| T |
51180957 |
ta |
51180958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 12525140 - 12525226
Alignment:
| Q |
205 |
tgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactccaaacac |
291 |
Q |
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||||||| ||||| |||||||||||| ||||||||||||| | ||| ||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
12525140 |
tgaaaattcagaaactttgtttcttaacttttaggataccttaatttcttaccgcacgtttgataaataaaacgccgttccaaacac |
12525226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 11026825 - 11026749
Alignment:
| Q |
214 |
agaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactccaaacac |
291 |
Q |
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| T |
11026825 |
agaagctttctttcctagctttcacgacaacgtgatttcttgccgcagttttgaaaaataaa-cgccactccaaacac |
11026749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 7561342 - 7561248
Alignment:
| Q |
196 |
ctactttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactccaaaca |
290 |
Q |
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|||||||| ||||||| | |||||||||||| ||| ||||| | | |||||||||||||||||| |||| | ||||| || ||| ||||||||| |
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| T |
7561342 |
ctactttcgtgaaaatagaaaagctttgtttcatagattttacggttccgtgattccttgccgcatgtttaaaaaatacaatgcctctccaaaca |
7561248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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