View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_high_5 (Length: 410)
Name: NF1309_high_5
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 70 - 328
Target Start/End: Original strand, 34006596 - 34006854
Alignment:
| Q |
70 |
caaatagaacaaccatatttgcttgacgtctaacattcatctaatactagacacaatgaaactgaactccaaaatctctacacctttagaatgaatagca |
169 |
Q |
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| T |
34006596 |
caaatagaacaaccatatttacttgacgattaacattcatctaatactagacacaatgaaactaaactccaaaatccctacacctttagaatgaatagca |
34006695 |
T |
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| Q |
170 |
tcaactagtattttggaatcgctctcgaacgtaacattgtgaagccctaagctgatgacctaattcattgcattccaaagacccatataacctcctcccc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34006696 |
tcaactagtattttggaatcgctctcgaacgtaacattgtgaagccctaagctgatgacctaattcattgcattccaaagacccatataacctcatcccc |
34006795 |
T |
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| Q |
270 |
ttcatgaattgctagtagcatatatacgaccaacctgttagagctgaactgttctcacc |
328 |
Q |
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| T |
34006796 |
ttcatgaattgctagtagcatatatacaaccaacctgttagagctgaactgttctcacc |
34006854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 354 - 410
Target Start/End: Original strand, 34006852 - 34006908
Alignment:
| Q |
354 |
accatagctggtcaagttcaaaatacttacgtagtcttacgattgcttctagaaaat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34006852 |
accatagctggtcaagttcaaaatacttacgtagtcttatgattgcttctagaaaat |
34006908 |
T |
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