View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1309_low_1 (Length: 692)

Name: NF1309_low_1
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1309_low_1
NF1309_low_1
[»] chr6 (7 HSPs)
chr6 (29-684)||(1182887-1183530)
chr6 (222-686)||(1236369-1236870)
chr6 (548-686)||(1193818-1193956)
chr6 (206-287)||(1194125-1194206)
chr6 (541-656)||(897601-897716)
chr6 (32-74)||(897774-897816)
chr6 (139-172)||(897234-897267)
[»] scaffold0302 (3 HSPs)
scaffold0302 (328-684)||(20067-20405)
scaffold0302 (32-120)||(20627-20715)
scaffold0302 (200-331)||(20426-20558)
[»] chr7 (3 HSPs)
chr7 (32-120)||(20256289-20256377)
chr7 (197-264)||(20256443-20256510)
chr7 (627-684)||(20256862-20256919)
[»] chr4 (2 HSPs)
chr4 (32-120)||(12857538-12857626)
chr4 (206-286)||(12857383-12857463)


Alignment Details
Target: chr6 (Bit Score: 553; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 29 - 684
Target Start/End: Complemental strand, 1183530 - 1182887
Alignment:
Q  29 aagaagaatctagagttcattttgtttttagataaataaatcactttattaattaaaaccatccagcttagcataaacagatagcatcatcatgataatt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||    
T  1183530 aagaagaatctagagttcattttgtttttagataaataaatcactttattaattaaaaccatccagcttagcat-------------catcatgataatt 1183444  T
Q  129 tctgatacataattgaaagaaaaacacttatcacctaataacac--cagagacaaaacgaagcgctcaagaagacaatcacacatgacagatgcaaaaat 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1183443 tctgatacataattgaaagaaaaacacttatcacctaataacacaccagagacaaaacgaagcgctcaagaagacaatcacacatgacagatgcaaaaat 1183344  T
Q  227 atcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaactccctcgacactaaaaacacatccaacagcaacatgaagcgcgc 326  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1183343 atcaaccccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaactccctcgacactaaaaacacattcaacagcaacatgaagcgcgc 1183244  T
Q  327 aaaaacagaacttagcagacctacattatctatatcaaaacctagatattctattgccatccatttatgaccctactattgctaacgagtcggttatttg 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  1183243 aaaaacagaacttagcagacctacattatctatatcaaaacctagatattctattgccatccgtttatgaccctactattgctaactagtcggttatttg 1183144  T
Q  427 attagcttccctatttatatgaacaaagcccatatccaccaaactctgcannnnnnncattttgttgctcaagaatcttatattacatggacacccatca 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  1183143 attagcttccctatttatatgaacaaagcccatatccaccaaactctgca-ttttttcattttgttgctcaagaatcttatattacatggacacccatca 1183045  T
Q  527 ctacaccccacccaatgtccaattctatacttctcctacaacctttcaaccaatattttcttttgaaaggaccgctagactgcaaaaagaattgccttaa 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1183044 ctacaccccacccaatgtccaattctatacttctcctacaacctttcaaccaatattttcttttgaaaggaccgctagactgcaaaaagaattgccttaa 1182945  T
Q  627 actcagattcatttgagtcttttaaaccaattgatgttgcaaacatcggcttcatctc 684  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  1182944 actcagattcgtttgagtcttttaaaccaattgatgttacaaacatcggcttcatctc 1182887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 222 - 686
Target Start/End: Original strand, 1236369 - 1236870
Alignment:
Q  222 aaaatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaactccctcgacac--taaaaacacatccaacagcaacatga 319  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||| ||||||||||||  |    
T  1236369 aaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactccc-cgacacactaaaaacacacccaacagcaacacaa 1236467  T
Q  320 agcgcgcaaaaa--------------------cagaacttagcagacctacattatctatatcaaaacctagatattctattgccatccatttatgaccc 399  Q
    ||| ||||||||                    |||||||| |||||||| ||||||||| |||||||||||||||||| |||| ||||||| | ||| ||    
T  1236468 agctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgtgatcc 1236567  T
Q  400 tactattgctaacgagtcggttatttgattagcttccctatttatatgaacaaagcccatatccaccaaactctgcannnnnnn-cattttgttgctcaa 498  Q
    | |  ||  |||| |||||| ||||||||| |||||| | ||||||||||||||||||| ||||| |||||||| ||        |||||||||||||||    
T  1236568 ttcatttattaacaagtcggctatttgattggcttccttttttatatgaacaaagcccacatccatcaaactctacatgttttttcattttgttgctcaa 1236667  T
Q  499 gaatcttatattacatggacacccatcactacaccccacccaatgt---------------ccaattctatacttctcctacaacctttcaaccaatatt 583  Q
    |||| | | |||| |||||||||||||||||| |||||||||||||               |||||||| ||||  ||  | ||||||||||||||||||    
T  1236668 gaatttcagattaaatggacacccatcactacgccccacccaatgttaagcattttaatgtccaattctgtactaatctaataacctttcaaccaatatt 1236767  T
Q  584 ttcttttgaaaggaccgctagactgcaaaaagaattgccttaaactcagattcatttgagtcttttaaaccaattgatgttgcaaacatcggcttcatct 683  Q
    ||||  |||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1236768 ttctgctgaaaggacaactagactgcaaaaacaattgccttaaactcagattcatttgagccttttaaaccaattgatgttgcaaacatcggcttcatct 1236867  T
Q  684 cac 686  Q
    |||    
T  1236868 cac 1236870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 548 - 686
Target Start/End: Complemental strand, 1193956 - 1193818
Alignment:
Q  548 attctatacttctcctacaacctttcaaccaatattttcttttgaaaggaccgctagactgcaaaaagaattgccttaaactcagattcatttgagtctt 647  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||| ||||   || |||||||||| ||| |||||||| | |||||||||| ||||||    
T  1193956 attctatacttatcttacaacctttcaaccaatattttctgttgaatggacaattaaactgcaaaaacaatagccttaaattaagattcattttagtctt 1193857  T
Q  648 ttaaaccaattgatgttgcaaacatcggcttcatctcac 686  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1193856 ttaacccaattgatgttgcaaacatcggcttcatctcac 1193818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 1194206 - 1194125
Alignment:
Q  206 acacatgacagatgcaaaaatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaactccct 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1194206 acacatgacagatgcaaaaatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatccct 1194125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 541 - 656
Target Start/End: Complemental strand, 897716 - 897601
Alignment:
Q  541 atgtccaattctatacttctcctacaacctttcaaccaatattttcttttgaaaggaccgctagactgcaaaaagaattgccttaaactcagattcattt 640  Q
    |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||   ||| |||||||||| ||||| |||||||||||||| ||||    
T  897716 atgtccaattctatacttatcttacaacctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttattt 897617  T
Q  641 gagtcttttaaaccaa 656  Q
    ||||||||||||||||    
T  897616 gagtcttttaaaccaa 897601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 897816 - 897774
Alignment:
Q  32 aagaatctagagttcattttgtttttagataaataaatcactt 74  Q
    |||||||||| | |||||||| |||||||||||||||||||||    
T  897816 aagaatctagtgatcattttgcttttagataaataaatcactt 897774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 897267 - 897234
Alignment:
Q  139 aattgaaagaaaaacacttatcacctaataacac 172  Q
    |||||||||||||||||| |||||||||||||||    
T  897267 aattgaaagaaaaacactcatcacctaataacac 897234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 113; Significance: 7e-57; HSPs: 3)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 328 - 684
Target Start/End: Complemental strand, 20405 - 20067
Alignment:
Q  328 aaaacagaacttagcagacctacattatctatatcaaaacctagatattctattgccatccatttatgaccctactattgctaacgagtcggttatttga 427  Q
    |||||||||||  |||||||| ||||||| | ||  ||||||||||||||||||||||||  ||  | | |||||| || ||||||||||||||||||||    
T  20405 aaaacagaactcggcagacctgcattatccacattgaaacctagatattctattgccatcagttcgtaatcctacttttactaacgagtcggttatttga 20306  T
Q  428 ttagcttccctatttatatgaacaaagcccatatccaccaaactctgcannnnnnn-cattttgttgctcaagaatcttatattacatggacacccatca 526  Q
    ||||||||| | |||| || ||||||| ||| ||||| |||||||||||        ||||||||||||||||||||| | |||| ||| ||||||||||    
T  20305 ttagcttccttgtttaaattaacaaagaccacatccatcaaactctgcatgtttttacattttgttgctcaagaatctcagattaaatgaacacccatca 20206  T
Q  527 ctacaccccacccaatgtccaattctatacttctcctacaacctttcaaccaatattttcttttgaaaggaccgctagactgcaaaaagaattgccttaa 626  Q
    |||||||||||||||      ||  ||            |||||||||||||||||||  |||||||||||   |||||||||||||| |||||||||||    
T  20205 ctacaccccacccaa------atgtta------------aacctttcaaccaatattta-ttttgaaaggaaaactagactgcaaaaacaattgccttaa 20125  T
Q  627 actcagattcatttgagtcttttaaaccaattgatgttgcaaacatcggcttcatctc 684  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  20124 actcagattcatttgagtcttttaaaccaattgatgtcacaaacatcagcttcatctc 20067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 20715 - 20627
Alignment:
Q  32 aagaatctagagttcattttgtttttagataaataaatcactttattaattaaaaccatccagcttagcataaacagatagcatcatca 120  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  20715 aagaatctagagttcattttgtttttagataaacaaatcactttattaagaaaaaccatccagcttagcataaacagatagcatcatca 20627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 200 - 331
Target Start/End: Complemental strand, 20558 - 20426
Alignment:
Q  200 acaatcacacatgacagatgcaaaaatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaactccctcg-acactaaaa 298  Q
    ||||| |||||||||||||   ||||||||||| ||||||||| | | |||||||||||| ||||||||||||||||||||| ||||  | |||||||||    
T  20558 acaataacacatgacagatcacaaaatatcaactccaactatgttactgccagcaaactgtataggaccaccagaaggaaaaatccccagcacactaaaa 20459  T
Q  299 acacatccaacagcaacatgaagcgcgcaaaaa 331  Q
    ||||| |||||| ||||| ||||| | ||||||    
T  20458 acacacccaacaacaacacgaagcacacaaaaa 20426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 20256289 - 20256377
Alignment:
Q  32 aagaatctagagttcattttgtttttagataaataaatcactttattaattaaaaccatccagcttagcataaacagatagcatcatca 120  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  20256289 aagaatctagagttcattttgtttttagataaacaaatcactttattaagaaaaatcatccagcttagcataaacagatagcatcatca 20256377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 20256443 - 20256510
Alignment:
Q  197 aagacaatcacacatgacagatgcaaaaatatcaacaccaactatgctgcagccagcaaactgcatag 264  Q
    |||||||| ||||||||||||||  ||||||||||| ||||||||| |||||||| ||||||||||||    
T  20256443 aagacaataacacatgacagatgacaaaatatcaactccaactatgttgcagccaacaaactgcatag 20256510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 627 - 684
Target Start/End: Original strand, 20256862 - 20256919
Alignment:
Q  627 actcagattcatttgagtcttttaaaccaattgatgttgcaaacatcggcttcatctc 684  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||| || |||||||    
T  20256862 actcagattcatttgagtcttttaagccaattgatgtcccaaacatcagcctcatctc 20256919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 12857626 - 12857538
Alignment:
Q  32 aagaatctagagttcattttgtttttagataaataaatcactttattaattaaaaccatccagcttagcataaacagatagcatcatca 120  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  12857626 aagaatctagagttcattttatttttagataaacaaatcactttattaagaaaaaccattcagcttagcataaacagatagcatcatca 12857538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 12857463 - 12857383
Alignment:
Q  206 acacatgacagatgcaaaaatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaactccc 286  Q
    |||||||||| |||  ||||||||||| ||||||||||||| | ||||||| ||||||||||||| |||||||||| ||||    
T  12857463 acacatgacatatgacaaaatatcaactccaactatgctgctgtcagcaaattgcataggaccactagaaggaaaaatccc 12857383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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