View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_10 (Length: 405)
Name: NF1309_low_10
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 41702088 - 41701716
Alignment:
| Q |
10 |
ccacagagaaaggaagtaaagtgattccaaaactggttttgattcgatgacaaagaaacattagaatcatatgccatcttctttagataatatgaactat |
109 |
Q |
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| T |
41702088 |
ccactgagaaaggaagtaaagtgattccaaaactggttttgattcgatgacaaagaaacattagaatcatatgccatcttctttagataatatgaactat |
41701989 |
T |
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| Q |
110 |
aatattcaaaagtatatgcaagtattagaatatttggaatggtttgtattgtcctccaaagtggtcttccttttgcaactaaggaaagtgttt------g |
203 |
Q |
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| T |
41701988 |
aatattcaaaagtatatgcaagtattagaatatttggaatggtttgtattgtcctccaaagtggtcttccttttgcaactaaggaaagtgttttcactca |
41701889 |
T |
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| Q |
204 |
agtttttaaaatggaaatttcattttcttatagtaggaaagcaccaccatggttatgattagtctaatccatgaaggattatgtgcgattttttacagaa |
303 |
Q |
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| T |
41701888 |
aagttttaaaatggaaatttcattttcttatagtaggaaagcaccaccatggttatgattagtctaatccatgaaggattatgtgcgattttttacagaa |
41701789 |
T |
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| Q |
304 |
aagtcctccaaaggttgannnnnnnnnnnnacttaatctaaagtcatggatacttatcaatcacccatcactt |
376 |
Q |
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| T |
41701788 |
aagtcctccaaaggttgattttttttttttacttaatctaaagtcatggatacttatcaatcacccatcactt |
41701716 |
T |
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