View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_11 (Length: 372)
Name: NF1309_low_11
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 55 - 288
Target Start/End: Complemental strand, 44926543 - 44926311
Alignment:
| Q |
55 |
caccaatatctgaaaaagtcacccctatctcgtttggagagataagctctcgtcttatgttcttctcaaaggcattgtcaggaggaacttcctgcaagca |
154 |
Q |
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| T |
44926543 |
caccaatatctgaaaaagtcacccctatctcgtttgcagagataagctctcgtcttatgttcttctcaaaggcattgtcaggaggaacttcctgcaagta |
44926444 |
T |
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| Q |
155 |
tgcataaataagccacaatgcaaaacaaacagaaatgagttaaacataaaagatgaaattatatatttgacaaaaccttctttgattcttttgtagtctt |
254 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44926443 |
tgcataaataagccgcaatgcaaaacaaacagaaatgagttaaacataaaagatgaaattatatatttgac-aaaccttctttgattcttttgtagtctt |
44926345 |
T |
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| Q |
255 |
cttattatcattgtcgctagtttcacccttctgg |
288 |
Q |
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| T |
44926344 |
cttattatcattatcgctactttcacccttctgg |
44926311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 220
Target Start/End: Complemental strand, 44934983 - 44934824
Alignment:
| Q |
55 |
caccaatatctgaaaaagtcacccctatctcgtttggagagataagctctcgtcttatgttcttctcaaaggcattgtcaggaggaacttcctgcaagca |
154 |
Q |
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||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||| | |||||||||||||||||| ||| ||||||||| |
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| T |
44934983 |
caccaatatctgaaaaagtcacctttatctcgtttgcagggataagctcttgtcttatgcattcctcaaaggcattgtcagg----act--ctgcaagca |
44934890 |
T |
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| Q |
155 |
tgcataaataagccacaatgcaaaacaaacagaaatgagttaaacataaaagatgaaattatatat |
220 |
Q |
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| T |
44934889 |
tgcataaattagcagcaatgcaaaacaaacggaaacaagttaaacataaaagctgaacttatatat |
44934824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 45988369 - 45988220
Alignment:
| Q |
55 |
caccaatatctgaaaaagtcacccctatctcgtttggagagataagctctcgtcttatgttcttctcaaaggcattgtcaggaggaacttcctgcaagca |
154 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||| || |||||||||| |||||||| | ||||||||||||||||||| ||| || ||||||||| |
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| T |
45988369 |
caccaatatctgaaaaagtcacttctatctcatttgcagggataagctcttgtcttatgcattcctcaaaggcattgtcaggatgaagtttctgcaagca |
45988270 |
T |
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| Q |
155 |
tgcataaataagccacaatgcaaaacaaacagaaatgagttaaacataaa |
204 |
Q |
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||||||||| | | |||| ||||||||||||||| ||||||||||||| |
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| T |
45988269 |
tgcataaattaacagcaatacaaaacaaacagaaacaagttaaacataaa |
45988220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 44926361 - 44926311
Alignment:
| Q |
289 |
gattcttttatagtcttcttattatcattgtcgctagtttcacccttctgg |
339 |
Q |
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||||||||| ||||||||||||||||||| |||||| |||||||||||||| |
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| T |
44926361 |
gattcttttgtagtcttcttattatcattatcgctactttcacccttctgg |
44926311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 44934554 - 44934488
Alignment:
| Q |
221 |
ttgacaaaaccttctttgattcttttgtagtcttcttattatcattgtcgctagtttcacccttctgg |
288 |
Q |
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|||||||| |||| |||||||||||| |||||||||| ||||| || |||||| ||||||||| |||| |
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| T |
44934554 |
ttgacaaaccctt-tttgattcttttttagtcttcttgttatccttctcgctactttcaccctcctgg |
44934488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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