View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_12 (Length: 343)
Name: NF1309_low_12
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 26453463 - 26453132
Alignment:
| Q |
1 |
ctgtggagaaaaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagtgagagaagaggtatattg |
100 |
Q |
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| T |
26453463 |
ctgtggagaacaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagagagagaagaggtatattg |
26453364 |
T |
|
| Q |
101 |
gaaaatgagagaagaaatatgaggagcctacataaagtaaaat------------gagttctagcattggagnnnnnnnttcagtggttgttaaatccta |
188 |
Q |
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| T |
26453363 |
gaaaatgagagaagaaatatgaggagcctacataaagtaaaataggaagtgtgttgagttctagcattggagaaaaaaattcagtggttgttaaatccta |
26453264 |
T |
|
| Q |
189 |
catggcatacttggacccacaatttagcagctaagaacaaaaaatttgttccagtgctttagaagctctaagattgatcggcacacccctttccattgct |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
26453263 |
catggcatacttggacccacaatttagcagctaagaacaaaatatttgttccagtgctttagaagctccaagattgatcggcacacccctttccattgtt |
26453164 |
T |
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| Q |
289 |
cagcctatcagatcgtaacttctgctaaacaa |
320 |
Q |
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| T |
26453163 |
cagcctatcagatcgtaacttctgctaaacaa |
26453132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 47680531 - 47680588
Alignment:
| Q |
173 |
tggttgttaaatcctacatggcatacttggacccacaatttagcagctaagaacaaaa |
230 |
Q |
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| T |
47680531 |
tggttgttaaatcctacatggcatacttggacccaatatttagcagctaagaacaaaa |
47680588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 47680406 - 47680488
Alignment:
| Q |
61 |
cagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat |
143 |
Q |
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| T |
47680406 |
cagaaaaagtaagagaaggggagagagaagaggtataatggatgataagagaagaaacacgagggtcctacataaagtaaaat |
47680488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 11727258 - 11727230
Alignment:
| Q |
211 |
tttagcagctaagaacaaaaaatttgttc |
239 |
Q |
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| T |
11727258 |
tttagcagctaagaacaaaaaatttgttc |
11727230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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