View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_13 (Length: 340)
Name: NF1309_low_13
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 40654170 - 40653831
Alignment:
| Q |
1 |
aaaatgggagcctagcttaaaacactgttaatgttgtcctaattagaaacaagagagtaagatgtgcaaaaagaaattaatctacaaaccagaggcagat |
100 |
Q |
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| T |
40654170 |
aaaatgggagcctagcttaaaacactgctaatgttgtcctaattagaaacaagagagtaagatgtgcaaaaagaaattaatctacaaaccagaggcagat |
40654071 |
T |
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| Q |
101 |
gctccccagtgtttgtcgataccttcaacagctgctgcaattgcctttcctttctcagctgccctttccatacgagcaatggcatcatataaacacttgg |
200 |
Q |
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| T |
40654070 |
gctccccagtgtttgtcgataccttcaacagctgctgcaattgcctttcctttctcagctgccctttccatacgagcaatggcatcatataaacacttgg |
40653971 |
T |
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| Q |
201 |
ctatgtcaaggatagcaaccacttctccattctccactaccggtaaatgtctgaatttccctgcaaaacataaatcagccttgtcttcagaaggcacgac |
300 |
Q |
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| T |
40653970 |
ctatgtcaaggatagcaaccacttctccattctccactaccggtaaatgtctgaatttccctgcaaaacataaatcagccttgtcttcagaaggcacgac |
40653871 |
T |
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| Q |
301 |
agcataatgtaacaggcaaatagcatatagcatgaagtaa |
340 |
Q |
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| T |
40653870 |
ggcataatgtaacaggcaaatagcatatagcatgaagtaa |
40653831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 103 - 263
Target Start/End: Complemental strand, 45428500 - 45428340
Alignment:
| Q |
103 |
tccccagtgtttgtcgataccttcaacagctgctgcaattgcctttcctttctcagctgccctttccatacgagcaatggcatcatataaacacttggct |
202 |
Q |
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| T |
45428500 |
tccccagtgtttttcaactccttcaacagctgctgcaattgcttttcctttctctgcggccctttccatacgtgcagtggcatcgtgcaaacactttgct |
45428401 |
T |
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| Q |
203 |
atgtcaaggatagcaaccacttctccattctccactaccggtaaatgtctgaatttccctg |
263 |
Q |
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| T |
45428400 |
atgtcgagtaaagccaaaacttctccattctccaccacaggtagatgcctaaatttccctg |
45428340 |
T |
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