View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1309_low_16 (Length: 294)

Name: NF1309_low_16
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1309_low_16
NF1309_low_16
[»] chr7 (7 HSPs)
chr7 (48-245)||(25811188-25811385)
chr7 (98-132)||(5034080-5034114)
chr7 (102-132)||(9479278-9479308)
chr7 (195-241)||(25592892-25592938)
chr7 (98-132)||(25685281-25685315)
chr7 (99-132)||(9271137-9271170)
chr7 (98-138)||(28032069-28032109)
[»] chr5 (3 HSPs)
chr5 (98-132)||(39981606-39981640)
chr5 (98-132)||(40417445-40417479)
chr5 (99-132)||(6391545-6391578)
[»] chr8 (2 HSPs)
chr8 (101-132)||(9617289-9617320)
chr8 (98-132)||(40691153-40691187)
[»] chr1 (5 HSPs)
chr1 (98-133)||(6135984-6136019)
chr1 (101-132)||(51370202-51370233)
chr1 (98-132)||(2759000-2759034)
chr1 (98-132)||(4362185-4362219)
chr1 (197-245)||(17775124-17775172)
[»] chr4 (2 HSPs)
chr4 (98-132)||(6893110-6893144)
chr4 (98-132)||(34510371-34510405)
[»] chr3 (2 HSPs)
chr3 (99-133)||(20601567-20601601)
chr3 (100-132)||(29697473-29697505)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 25811385 - 25811188
Alignment:
Q  48 tagtatcataggcatgagtctagctttttgaaagtatgatatgatatgttagcctatttcatatgaacatatttaaataagcaatttgttcagtgtttaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25811385 tagtatcataggcatgagtctagctttttgaaagtatgatatgatatgttagcctatttcatatgaacatatttaaataagcaatttgttccgtgtttaa 25811286  T
Q  148 aaatagactaagggacaaataaactattgcaactttttacgaaagctgaaattattcgaggtcggttgagtttcctcaattgtgattccctttgcttc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25811285 aaatagactaagggacaaataaactattgcaactttttacgaaagctgaaattattcgaggtcggttgagtttcctcaattgtgattccctttgcttc 25811188  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 5034080 - 5034114
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaat 132  Q
    |||||||||||||||||||||||||||||||||||    
T  5034080 agcctatttcatatgaacatatttaaataagcaat 5034114  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 132
Target Start/End: Original strand, 9479278 - 9479308
Alignment:
Q  102 tatttcatatgaacatatttaaataagcaat 132  Q
    |||||||||||||||||||||||||||||||    
T  9479278 tatttcatatgaacatatttaaataagcaat 9479308  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 25592938 - 25592892
Alignment:
Q  195 gaaattattcgaggtcggttgagtttcctcaattgtgattccctttg 241  Q
    ||||||| ||| |||||||| ||||||||||||||||||||| ||||    
T  25592938 gaaattagtcggggtcggttaagtttcctcaattgtgattccttttg 25592892  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 25685281 - 25685315
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaat 132  Q
    ||||||||||||||||| |||||||||||||||||    
T  25685281 agcctatttcatatgaatatatttaaataagcaat 25685315  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 9271137 - 9271170
Alignment:
Q  99 gcctatttcatatgaacatatttaaataagcaat 132  Q
    ||||||||||||||||||| ||||||||||||||    
T  9271137 gcctatttcatatgaacatctttaaataagcaat 9271170  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 28032109 - 28032069
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaatttgttc 138  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  28032109 agcctatttcatgtgaacatctttaaataagcaatgtgttc 28032069  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 39981606 - 39981640
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaat 132  Q
    |||||||||||||||||||||||||||||||||||    
T  39981606 agcctatttcatatgaacatatttaaataagcaat 39981640  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 40417479 - 40417445
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaat 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  40417479 agcctatttcatatgaacatctttaaataagcaat 40417445  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 6391578 - 6391545
Alignment:
Q  99 gcctatttcatatgaacatatttaaataagcaat 132  Q
    ||||||||||||||||||| ||||||||||||||    
T  6391578 gcctatttcatatgaacatctttaaataagcaat 6391545  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 9617289 - 9617320
Alignment:
Q  101 ctatttcatatgaacatatttaaataagcaat 132  Q
    ||||||||||||||||||||||||||||||||    
T  9617289 ctatttcatatgaacatatttaaataagcaat 9617320  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 40691153 - 40691187
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaat 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  40691153 agcctatttcatatgaacatctttaaataagcaat 40691187  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 6135984 - 6136019
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaatt 133  Q
    |||||||||||||||||||| |||||||||||||||    
T  6135984 agcctatttcatatgaacatctttaaataagcaatt 6136019  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 51370202 - 51370233
Alignment:
Q  101 ctatttcatatgaacatatttaaataagcaat 132  Q
    ||||||||||||||||||||||||||||||||    
T  51370202 ctatttcatatgaacatatttaaataagcaat 51370233  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 2759000 - 2759034
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaat 132  Q
    |||||||||||||||||||||||||||||| ||||    
T  2759000 agcctatttcatatgaacatatttaaataaacaat 2759034  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 4362185 - 4362219
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaat 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  4362185 agcctatttcatatgaacatttttaaataagcaat 4362219  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 17775124 - 17775172
Alignment:
Q  197 aattattcgaggtcggttgagtttcctcaattgtgattccctttgcttc 245  Q
    ||||| || ||||| | ||||||||||||||||||||||| ||||||||    
T  17775124 aattagtcaaggtcagctgagtttcctcaattgtgattccatttgcttc 17775172  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 6893144 - 6893110
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaat 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  6893144 agcctatttcatatgaacatttttaaataagcaat 6893110  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 34510371 - 34510405
Alignment:
Q  98 agcctatttcatatgaacatatttaaataagcaat 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  34510371 agcctatttcatatgaacatctttaaataagcaat 34510405  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 20601567 - 20601601
Alignment:
Q  99 gcctatttcatatgaacatatttaaataagcaatt 133  Q
    ||||||||||||||||||| |||||||||||||||    
T  20601567 gcctatttcatatgaacatctttaaataagcaatt 20601601  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 29697473 - 29697505
Alignment:
Q  100 cctatttcatatgaacatatttaaataagcaat 132  Q
    |||||||||||||||||| ||||||||||||||    
T  29697473 cctatttcatatgaacatctttaaataagcaat 29697505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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