View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_17 (Length: 292)
Name: NF1309_low_17
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 41519636 - 41519788
Alignment:
| Q |
1 |
aataaaccagtataggggctagctactctggtatttaaggaggtgcgcaataaattacttctcagatatcatcctaaaagccattggtgttcaaaaaacg |
100 |
Q |
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| T |
41519636 |
aataaaccagtataggggctagctactctggtatttaaggaggtgcgtaataaattacttctcagatatcatcctaaaagccattggtgttcaaaaaacg |
41519735 |
T |
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| Q |
101 |
atggaacaatagtacatatatatcgccgtcaaccttattaaatttgaatctgct |
154 |
Q |
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| T |
41519736 |
atggaacaata-tacatatatatcgtcgtcaaccttactaaatttgaatctgct |
41519788 |
T |
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Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 41519817 - 41519897
Alignment:
| Q |
183 |
ccttacttgtcatgtattaagatttattccttaaaataatgtattaaacttggtttggcctgcacaaacttgtgttgtctt |
263 |
Q |
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| T |
41519817 |
ccttacttgtcatgtattaagatttattccttaaaataatgtattaaacttggtttggcctgcacaaacttgtgttgtctt |
41519897 |
T |
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