View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_18 (Length: 278)
Name: NF1309_low_18
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_18 |
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| [»] scaffold0154 (2 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 14564 - 14804
Alignment:
| Q |
9 |
caacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatcttt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
14564 |
caacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattcttctccggcaccaatctgaagcaacaacgaccacatatttgaatcttt |
14663 |
T |
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| Q |
109 |
ctccaaattccaagctggttttccagttaccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgat |
208 |
Q |
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| T |
14664 |
ctccaaattccaagctggttttccagttaccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgat |
14763 |
T |
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| Q |
209 |
tccggtgacataaaaagtggggttcctctgcattcgaaact |
249 |
Q |
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| T |
14764 |
tccggcgacataaaaagcggggttcctctgcattcaaaact |
14804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 23984 - 24224
Alignment:
| Q |
9 |
caacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatcttt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
23984 |
caacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattcttctccggcaccaatctgaagcaacaacgaccacatatttgaatcttt |
24083 |
T |
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| Q |
109 |
ctccaaattccaagctggttttccagttaccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgat |
208 |
Q |
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| T |
24084 |
ctccaaattccaagctggttttccagttaccatctccaccactgcacacccaagtgcccaaatatccgccggagattcatgctcgccattgtttactgat |
24183 |
T |
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| Q |
209 |
tccggtgacataaaaagtggggttcctctgcattcgaaact |
249 |
Q |
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| T |
24184 |
tccggcgacataaaaagcggggttcctctgcattcaaaact |
24224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 772 - 539
Alignment:
| Q |
9 |
caacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatcttt |
108 |
Q |
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|||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||| |
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| T |
772 |
caacaaaatcttttccttcttttgacaattcttcgggtatcaccggcgattcttctccggtaccaatccgaagcaacaatgaccacatatttgaatcttt |
673 |
T |
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| Q |
109 |
ctccaaattccaagctggttttccagttaccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgat |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| || | |||||||||| |
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| T |
672 |
ctccaaattccatgctggttttccagttaccatctccaccaccgcacacccaagtgcccatatatccgccggagattcatgctcaccgtggtttactgat |
573 |
T |
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| Q |
209 |
tccggtgacataaaaagtggggttcctctgcatt |
242 |
Q |
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||||| |||||||||||||| ||||| ||||||| |
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| T |
572 |
tccggcgacataaaaagtggagttcccctgcatt |
539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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