View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_2 (Length: 569)
Name: NF1309_low_2
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 10838023 - 10837680
Alignment:
| Q |
3 |
atcaaaatggtgaaaccaataacaaaggtataggcaattaattaggctatttattctcgtatctcaaaattataattttaaattgcactttagactgttg |
102 |
Q |
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| T |
10838023 |
atcaaaatggtgaaaccaataacaaaggtataggcaatta----ggctatttatcctcgtatctcaaaattataattttaaattgcactttagactgttg |
10837928 |
T |
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| Q |
103 |
taactataatcgagttaattatagttacaacagtctaacaacaatctctctaactacatctccgttgttaaattattctaacaccggagagatacagtac |
202 |
Q |
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| T |
10837927 |
taactataatcgagttaattatagttacaacggtctaacaacaatctctctaactacatctccgttgttaaattaatctaacaccggagagatatagtac |
10837828 |
T |
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| Q |
203 |
tcttaggtatagattaatttaattctaatatagttggtgcaatttaataatcaaccctcttgatccattggtttaaagattaaacctagtatattccgaa |
302 |
Q |
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| T |
10837827 |
tcttatgtatagattaatttaattctaatatagttggtgcaatttaataatcaacccgcttgatccattggttttaagattaaacctagtatattccgaa |
10837728 |
T |
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| Q |
303 |
ggac-----------agacaatgattagtccttgattaaaagctagtc |
339 |
Q |
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| T |
10837727 |
ggacatgaactactaagacaatgattagtctttgattaaaagctagtc |
10837680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 442 - 540
Target Start/End: Complemental strand, 10837577 - 10837479
Alignment:
| Q |
442 |
attgaaggtggtcaagaaaaggaaataggtggggaagaggacttcaagttcaatggggtgaaggtaggagaacaaggagaaggacccaatgggcctaac |
540 |
Q |
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| T |
10837577 |
attgaaggtggtcaagaaaaggaaataggtggggaagaggacttcaagttcaatggggtgaaggtaggagaacaaggagaaggacccaatgggcctaac |
10837479 |
T |
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