View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_20 (Length: 268)
Name: NF1309_low_20
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 30715489 - 30715749
Alignment:
| Q |
1 |
aaaccatctttctcacaagaagcacacattggcaatgttccagaaagcccttcagtttcttcttataatgtcccaaatcccacacaacccatgaatgcat |
100 |
Q |
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| T |
30715489 |
aaaccatctttctcacaagaagcacacattggcaatgttccagaaagcccttcagtttcttcttataatgtccgaaatcccacacaacccatgaatgcat |
30715588 |
T |
|
| Q |
101 |
cttcatacataccaatcgctcctttaccaatttttcatggcactccaaacgaatccccaataacccatttgagtcgtttcaacaaagtatgtagagcaaa |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30715589 |
cttcatacatacaaatcgctcctttaccaatttttcgtggcactccaaacgaatccccaataacccatttgagtcgtttcaacaaagtatgtagagcaaa |
30715688 |
T |
|
| Q |
201 |
caatgcatcctccgttgaaatgcaaaagaagatcttccctgtcacacttgaagaataatct |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30715689 |
caatgcatcctccgttgaaatgcaaaagaagatcttccctgtcacacttgaagaagaatct |
30715749 |
T |
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