View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_22 (Length: 257)
Name: NF1309_low_22
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 33223261 - 33223481
Alignment:
| Q |
13 |
ccatccattccattaaaatacctccgctctcctttgttgagccaaaccgaaagatatttaaatacttggcaaacacattgcaattattattgcctttaat |
112 |
Q |
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| T |
33223261 |
ccatccattccattaaaaaacctcccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattattattgccattaat |
33223360 |
T |
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| Q |
113 |
cacaccttcctttttaataatatatcctccaatttgcatatgcaaatgaggatcgtttccttct------tcattctcagtctcggtctcaggttcaatc |
206 |
Q |
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|||||||| || |||| |||| |||||||||||||||||||||| ||| ||||||||| |||| ||||||||||||||||| || | ||||||| |
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| T |
33223361 |
cacaccttgattgttaacaatagatcctccaatttgcatatgcaattgaagatcgtttctttcttcatcatcattctcagtctcggtatcggattcaatc |
33223460 |
T |
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| Q |
207 |
tcaaccagttgtctgttctca |
227 |
Q |
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|||| || ||||||||||||| |
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| T |
33223461 |
tcaatcaattgtctgttctca |
33223481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 33226241 - 33226323
Alignment:
| Q |
19 |
attccattaaaatacctccgc-tctcctttgttgagccaaaccgaaagatatttaaatacttggcaaacacattgcaattatt |
100 |
Q |
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||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33226241 |
attccattaaaatacctccccctctccttcgttgacccaaaccgaaagatatttaaatacttggcaaacacattgcaattatt |
33226323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 33226350 - 33226397
Alignment:
| Q |
181 |
tctcagtctcggtctcaggttcaatctcaaccagttgtctgttctcag |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33226350 |
tctcagtctcggtctcaggttcaatctcaaccagttgtctgttctcag |
33226397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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