View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_25 (Length: 252)
Name: NF1309_low_25
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 33226006 - 33225828
Alignment:
| Q |
1 |
aacatgttgagcatgaaagttgagttatctcctcccaaccgaattttcaaaacacgcaatctaatccattacaaattatatt--gggtnnnnnnnnttac |
98 |
Q |
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| T |
33226006 |
aacatgttgagcatgaaagttgagttatctcctcccaactgaattttcaaaacacgcaatctaatccattacaaattatattaggggtaaaaaaaattac |
33225907 |
T |
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| Q |
99 |
tacttgaaccaatctgttgcttaaaattataaacattttagttgaaagagaaagaaacaaagaatgaagacgtaaagac |
177 |
Q |
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| T |
33225906 |
tacttgaaccaatctgttgcttaaaattataaacattttagttgaaagagaaagaaacaaagaatgaagacgtaaagac |
33225828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 33227803 - 33227739
Alignment:
| Q |
113 |
tgttgcttaaaattataaacattttagttgaaagagaaagaaacaaagaatgaagacgtaaagac |
177 |
Q |
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| T |
33227803 |
tgttgtttaaaattattatcattttagctgaaagagaaagaaacaaagaatgaagacgtaaagac |
33227739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 33227909 - 33227851
Alignment:
| Q |
14 |
tgaaagttgagttatctcctcccaaccgaattttcaaaacacgcaatctaatccattac |
72 |
Q |
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|||||| ||||||||||||||||| | |||||||| ||||| ||||||||| |||||| |
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| T |
33227909 |
tgaaagctgagttatctcctcccatctgaattttcgcaacacacaatctaattcattac |
33227851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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