View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_28 (Length: 251)
Name: NF1309_low_28
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_28 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 44925797 - 44926040
Alignment:
| Q |
8 |
tatcataggatgtacaatttgttccatgagctattaaataaactttcagggtcagttttgatacttggttcccggatttatgattccgaagataaatgtg |
107 |
Q |
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| T |
44925797 |
tatcctaggatgtacaatttgttccatgagctattaaataaactttcagggtcagttttgatacttggttcccggatttatgattccgaagataaatgtg |
44925896 |
T |
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| Q |
108 |
tagaagttgatgaaaaactcactatgttattcccttgcaacattgagatcaaaccgcctcaagatgagtctcgtctcaaaatttggaaagtccaactaga |
207 |
Q |
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| T |
44925897 |
tagaagttgatgaaaaactcactatgttattcccttgcaacattgagatcaaaccgcctcaagatgagtctcgtctcaaaatttggaaagtccaactaga |
44925996 |
T |
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| Q |
208 |
agaggccatgacaaagactcagttgaaacacatttctcaagtgc |
251 |
Q |
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| T |
44925997 |
agaggccatgacaaagactcagttgaaacacatttctcaagtgc |
44926040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 44933960 - 44934181
Alignment:
| Q |
14 |
aggatgtacaatttgttccatgagctattaaataaactttcagggtcagttttgatacttggttcccggatttatgattccgaagataaatgtgtagaag |
113 |
Q |
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| T |
44933960 |
aggatgtacagattgttccaaaagacattaaataaactttcaggatcagtgttgatactcggttcccggccttatgatttaaaatataactgtaccaaag |
44934059 |
T |
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| Q |
114 |
ttgatgaaaaactcactatgttattcccttgcaacattgagatcaaaccgcctcaagatgagtctcgtctcaaaatttggaaagtccaactagaagaggc |
213 |
Q |
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| T |
44934060 |
tcaatgaaaaactcactatgttattcccttacaacatagagatcacaccacctcaagatgagactcatctcaaaatctggaaaagccaactaaaaaaggc |
44934159 |
T |
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| Q |
214 |
catgacaaagactcagttgaaa |
235 |
Q |
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| T |
44934160 |
catgaaaaagactcacttgaaa |
44934181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 32199384 - 32199565
Alignment:
| Q |
38 |
ctattaaataaactttcagggtcagttttgatacttggttcccggatttatgattccgaagataaatgtgtagaagttgatgaaaaactcactatgttat |
137 |
Q |
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| T |
32199384 |
ctattaaagaaactttcaggatcagtgttgatcctcggttcccagatttatgatttagaagataattgtaaaaaagttgatgaaaagcttgccatgttat |
32199483 |
T |
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| Q |
138 |
tcccttgcaacattgagatcaaaccgcctcaagat-gagtctcgtctcaaaatttggaaagtccaactagaagaggccatga |
218 |
Q |
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| T |
32199484 |
tcccttgcaacgttgagatcaaactgccttcagataaaaactcgtctcaaaatctggaaagcccaattataagaggctatga |
32199565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 32197004 - 32197091
Alignment:
| Q |
132 |
tgttattcccttgcaacattgagatcaaaccgcctcaaga-tgagtctcgtctcaaaatttggaaagtccaactagaagaggccatga |
218 |
Q |
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| T |
32197004 |
tgttattcccttgcaacgttgagatcaaactgccttaagattaaaactcgtctcaaaatctggaaagcccaattagaagaggctatga |
32197091 |
T |
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