View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_29 (Length: 250)
Name: NF1309_low_29
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43114092 - 43113871
Alignment:
| Q |
1 |
acatctatggtaatagttttttctacttttctctatattattattgtatcaaagcaaagaaaagtaaatgttgataaattagtagaagaaaagtttctga |
100 |
Q |
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| T |
43114092 |
acatctatggtaatagttttttctacttttctctatattattattgtatcaaagcaaagaaaagtaaatgttgataaattagtagaagaaaagtttctga |
43113993 |
T |
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| Q |
101 |
attcagatgatgagaaaagtaatgaagaaaatgaagcacaagaagaagttaatatcgatggatcagaaagtgaaagccaagaagatcatttgtcaacttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43113992 |
attcagatgatgagaaaagtaatgaagaaaatgaagcacaagaagaagttaatattgatggatcagaaagtgaaagccaagaagatcatttgtcaacttc |
43113893 |
T |
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| Q |
201 |
tgaaggatctgaagtagatcat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
43113892 |
tgaaggatctgaagtagatcat |
43113871 |
T |
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