View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309_low_3 (Length: 546)
Name: NF1309_low_3
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 30 - 498
Target Start/End: Complemental strand, 34583063 - 34582579
Alignment:
| Q |
30 |
cttacacagagaggccactgttttggagtggactttaggacgtctcaatacaacatctttcttcctgtgtaagcatcacataatcatctatcaatgtata |
129 |
Q |
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| T |
34583063 |
cttacatagagaggccactgtttcggagtggactttaggacgtctcaatacaacatctttcttcctgtgtaagcatcacataatcatctatcaatgtata |
34582964 |
T |
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| Q |
130 |
tactattctaaacctctcacccgtgacccacc----------gattaacttgagaattaaagtgtaggtcggtgggaccatgatttttcctaaatca--- |
216 |
Q |
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| T |
34582963 |
tactattctaaacctctcacctgtgacccacctcaaacattagattaagttgagaattaaagtgtaggtcggtgggaccatgatttttcctaaatcacat |
34582864 |
T |
|
| Q |
217 |
-------tatgaaggtatgaataattagagaagtatacaatttggcaagtaataaaagacattcccctcnnnnnnnnnngaaggtaataaaagacattat |
309 |
Q |
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| T |
34582863 |
aatcacttatgaaggtatgaataattagagaagtatacaatttggcaagtaataaaagacattcccctcaaaaagaaa--aaagtaataaaagacattat |
34582766 |
T |
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| Q |
310 |
tctaaacctttttaatgaaattcgagttagnnnnnnncgatgggaccatggtcaacctcacctgaccccaaatcgttttgcctccatttctcgtcaatta |
409 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34582765 |
tctaaaccttt--aatgaaattcgagttagaaaaaaacgatgggaccatggtcaaccccacctgaccccaaatcgttttgcctccatttctcgtcaatta |
34582668 |
T |
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| Q |
410 |
cattacccgcctttacgaagtcagaaacactgaaaccgttactatataaacccaattcgaaaccacaatgctcattttcactgtttcct |
498 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34582667 |
cattacccgcctttacgaagtcagaaacactgaagccgttactatataaacccaattcgaaaccacaatgctcatttccactgtttcct |
34582579 |
T |
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