View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1309_low_6 (Length: 434)

Name: NF1309_low_6
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1309_low_6
NF1309_low_6
[»] chr2 (12 HSPs)
chr2 (1-417)||(7431996-7432430)
chr2 (296-417)||(44437828-44437944)
chr2 (337-417)||(33504323-33504398)
chr2 (298-417)||(38435013-38435127)
chr2 (296-411)||(26784453-26784563)
chr2 (151-224)||(15836665-15836738)
chr2 (296-361)||(37470291-37470356)
chr2 (302-362)||(43260469-43260529)
chr2 (296-352)||(42092576-42092632)
chr2 (296-359)||(45077814-45077877)
chr2 (296-329)||(13240935-13240968)
chr2 (296-366)||(14197311-14197385)
[»] chr5 (10 HSPs)
chr5 (296-407)||(6859440-6859546)
chr5 (296-417)||(42199345-42199461)
chr5 (296-417)||(21952416-21952530)
chr5 (296-367)||(7359412-7359483)
chr5 (296-417)||(2713003-2713119)
chr5 (296-417)||(14749366-14749482)
chr5 (296-407)||(6889052-6889158)
chr5 (296-411)||(15489605-15489715)
chr5 (296-364)||(21093811-21093879)
chr5 (296-360)||(43475299-43475363)
[»] chr4 (14 HSPs)
chr4 (319-417)||(47147455-47147548)
chr4 (298-364)||(21879308-21879374)
chr4 (296-417)||(31961373-31961489)
chr4 (296-407)||(28351618-28351724)
chr4 (308-406)||(34233142-34233235)
chr4 (296-366)||(54470266-54470336)
chr4 (307-364)||(11389794-11389851)
chr4 (296-417)||(31897535-31897651)
chr4 (296-367)||(8459187-8459258)
chr4 (296-411)||(13805378-13805488)
chr4 (296-367)||(31339595-31339665)
chr4 (379-417)||(10209173-10209211)
chr4 (296-344)||(28497548-28497596)
chr4 (296-364)||(42639175-42639243)
[»] chr3 (9 HSPs)
chr3 (296-367)||(36304037-36304108)
chr3 (296-417)||(21200607-21200723)
chr3 (296-344)||(3870619-3870667)
chr3 (379-417)||(26990350-26990388)
chr3 (296-362)||(29374993-29375059)
chr3 (296-352)||(33307187-33307243)
chr3 (373-417)||(36820084-36820128)
chr3 (298-366)||(42510169-42510237)
chr3 (296-364)||(50249446-50249514)
[»] chr1 (11 HSPs)
chr1 (294-367)||(33561010-33561083)
chr1 (296-367)||(5338783-5338854)
chr1 (296-417)||(38868941-38869057)
chr1 (296-364)||(43423778-43423846)
chr1 (296-367)||(10569219-10569290)
chr1 (296-367)||(13827722-13827793)
chr1 (343-401)||(28511924-28511977)
chr1 (296-329)||(46388435-46388468)
chr1 (296-329)||(46394879-46394912)
chr1 (319-367)||(8796291-8796339)
chr1 (296-364)||(32404681-32404749)
[»] chr6 (7 HSPs)
chr6 (296-367)||(21870217-21870288)
chr6 (296-359)||(2079399-2079462)
chr6 (296-364)||(32913417-32913485)
chr6 (296-411)||(579477-579587)
chr6 (296-363)||(14389324-14389391)
chr6 (376-417)||(10617341-10617382)
chr6 (296-364)||(6906982-6907050)
[»] chr8 (6 HSPs)
chr8 (296-367)||(16715332-16715403)
chr8 (379-417)||(16351515-16351553)
chr8 (296-364)||(29520709-29520777)
chr8 (324-367)||(39051229-39051272)
chr8 (310-407)||(32931034-32931126)
chr8 (312-364)||(29700351-29700403)
[»] chr7 (7 HSPs)
chr7 (296-367)||(6420642-6420713)
chr7 (297-367)||(47848734-47848804)
chr7 (296-417)||(30144834-30144950)
chr7 (296-367)||(19262586-19262656)
chr7 (302-367)||(34341531-34341596)
chr7 (296-329)||(48202892-48202925)
chr7 (296-364)||(43282467-43282534)
[»] scaffold0018 (1 HSPs)
scaffold0018 (296-364)||(44023-44091)
[»] scaffold0325 (1 HSPs)
scaffold0325 (381-417)||(11936-11972)


Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 7432430 - 7431996
Alignment:
Q  1 ctttcttcactgcaatggttattttatttcagctataggctgttcactgtactgtttttgttcttccactacagcaatacttggagaataggctaaagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7432430 ctttcttcactgcaatggttattttatttcagctataggctgttcactgtactgtttttgttcttccactacagcaatacttggagaataggctaaagca 7432331  T
Q  101 tcttgctcttgaaaaagcaaaagggaagtacc------------------atgtcactatgtctactgacaatacattaaggaatatgaaggtttaaaca 182  Q
    ||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7432330 tcttgctcttgaaaaagcaaaagggaagtacctataccctcacaagttccatgtcactatgtctactgacaatacattaaggaatatgaaggtttaaaca 7432231  T
Q  183 atggacaacaccttgaagacgtttctgtgtctttgactggtaggcattaatgatctctgttgacgttttatctcttgaatttagtggttggttttgttga 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||| ||||||||||||||||||||||||||||||    
T  7432230 atggacaacaccttgaagacgtttctgtgtctttgactggtaggcattaattatctctgttgattttttttctcttgaatttagtggttggttttgttga 7432131  T
Q  283 tatatttgagcagagagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacct 382  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7432130 tatatttgagcagagagagaagacttgtagattccttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagaggaaaacct 7432031  T
Q  383 agaaaaactattggagaaactattaagaaggatct 417  Q
    |||||||||||||||||||||||||||||||||||    
T  7432030 agaaaaactattggagaaactattaagaaggatct 7431996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 44437944 - 44437828
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||||||| |||||| || ||||||| ||| || |||||||| | ||||||||||||||||| |||     |  | |||||||||||||||      
T  44437944 agagagaagacttgtggattctgtaataaggagtatagatgagatggaggggagtcagatcactagaggtagg-----ggtagacctagaaaaactatat 44437850  T
Q  396 gagaaactattaagaaggatct 417  Q
    ||||||||||||||||||||||    
T  44437849 gagaaactattaagaaggatct 44437828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 417
Target Start/End: Original strand, 33504323 - 33504398
Alignment:
Q  337 agatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattggagaaactattaagaaggatct 417  Q
    |||||||| ||||||||||||||||||||||     |||||||||||||||||||||  |||||||||||||||| |||||    
T  33504323 agatggagggtagtcagatcactagaggcag-----agaaaaacctagaaaaactataagagaaactattaagaaagatct 33504398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 298 - 417
Target Start/End: Original strand, 38435013 - 38435127
Alignment:
Q  298 agagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattgga 397  Q
    ||||||||||||||||| |||||||||||||| || || | ||||||  |||||||||||||||||||     ||||  | ||||||||||||||   ||    
T  38435013 agagaagacttgtagatgctttagtaaggagagtagatcatatggaggatagtcagatcactagaggc-----agaggtagacctagaaaaactacaaga 38435107  T
Q  398 gaaactattaagaaggatct 417  Q
    |||||||||||||| |||||    
T  38435108 gaaactattaagaaagatct 38435127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 411
Target Start/End: Complemental strand, 26784563 - 26784453
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||  ||| |||| | ||||||||||  || || |||||||| ||||||| ||||||||||||||     ||||| |||||||||||||||      
T  26784563 agagagaagatatgtggattttgtagtaaggagggtagataagatggagggtagtcaaatcactagaggcag-----agaaagacctagaaaaactataa 26784469  T
Q  396 gagaaactattaagaa 411  Q
    ||||||||||||||||    
T  26784468 gagaaactattaagaa 26784453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 15836665 - 15836738
Alignment:
Q  151 acaatacattaaggaatatgaaggtttaaacaatggacaacaccttgaagacgtttctgtgtctttgactggta 224  Q
    |||||| || |||||||||||||||||||   |||| ||||| ||||| || ||||||||||||||||||||||    
T  15836665 acaatatatcaaggaatatgaaggtttaagtgatgggcaacatcttgacgatgtttctgtgtctttgactggta 15836738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 37470356 - 37470291
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactag 361  Q
    |||||||||||||||||||| | || |||||||| || ||||||||||  ||||||||||||||||    
T  37470356 agagagaagacttgtagattatgtattaaggagagtagattagatggaaggtagtcagatcactag 37470291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 43260469 - 43260529
Alignment:
Q  302 aagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactaga 362  Q
    |||||||||||||||| ||||||||||| || || |||||||| ||||||| |||||||||    
T  43260469 aagacttgtagattctatagtaaggagagtagatcagatggagggtagtcaaatcactaga 43260529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 42092576 - 42092632
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtca 352  Q
    ||||||||| |||||||||| | ||||||||||| || ||||||||||| |||||||    
T  42092576 agagagaaggcttgtagattttgtagtaaggagagtagattagatggagggtagtca 42092632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 45077814 - 45077877
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcact 359  Q
    |||||||| ||||||||||| | ||||||||||| || || ||||||||  |||||||||||||    
T  45077814 agagagaaaacttgtagattttgtagtaaggagagtagatcagatggaggatagtcagatcact 45077877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 13240968 - 13240935
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggaga 329  Q
    ||||||||||| ||||||||||||||||||||||    
T  13240968 agagagaagacatgtagattctttagtaaggaga 13240935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 14197385 - 14197311
Alignment:
Q  296 agagagaagacttgtagattct----ttagtaaggagaataaattagatggagagtagtcagatcactagaggca 366  Q
    |||| |||||||||||||||||     ||||||||||| ||  | |||||||||||||||| |||||||||||||    
T  14197385 agagtgaagacttgtagattctctaactagtaaggagagtaggtcagatggagagtagtcaaatcactagaggca 14197311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 407
Target Start/End: Original strand, 6859440 - 6859546
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||||||| |||||| |||||||| |||||||||||||||||  |||||| | |||||||||     ||||| || |||||||||||||||      
T  6859440 agagagaagacttgtggattctgtagtaaggggaataaattagatggaggatagtcaaaccactagagg-----aagaggaagacctagaaaaactataa 6859534  T
Q  396 gagaaactatta 407  Q
    ||||||||||||    
T  6859535 gagaaactatta 6859546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 42199345 - 42199461
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||| |||||||||| ||||||||||| || || | |||||||||||||| ||||||||     ||  ||||||| ||||||||||||||||     
T  42199345 agagagaagacatgtagattctgtagtaaggagagtagatcacatggagagtagtcaaatcactag-----ggggagagaaagacctagaaaaactatta 42199439  T
Q  396 gagaaactattaagaaggatct 417  Q
    || |||||||| |||| |||||    
T  42199440 gacaaactatttagaaagatct 42199461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 21952416 - 21952530
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||| | ||| |||||| |||||||||||||| || |||||||| | ||||| ||||||||||| |||     | || |||||||||||||||      
T  21952416 agagagaagtcctgtggattctatagtaaggagaatagatcagatggaggggagtcaaatcactagaggtagg-----ggaagacctagaaaaactat-- 21952508  T
Q  396 gagaaactattaagaaggatct 417  Q
    ||||||||||| ||||||||||    
T  21952509 gagaaactattgagaaggatct 21952530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 7359483 - 7359412
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||  |||||||||| ||||||||||| || || ||||||||  |||||| ||||||||||||||    
T  7359483 agagagaagatatgtagattctgtagtaaggagagtagatcagatggaggatagtcatatcactagaggcag 7359412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 2713003 - 2713119
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||| ||| |||||| ||  ||||||| || || ||||||||   ||||| |||||||||| ||||     | || |||||||||||||||      
T  2713003 agagagaagacctgtggattctgtatgaaggagagtagatcagatggaggagagtcaaatcactagagtcagg-----ggaagacctagaaaaactataa 2713097  T
Q  396 gagaaactattaagaaggatct 417  Q
    ||||||||||||||||||||||    
T  2713098 gagaaactattaagaaggatct 2713119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 14749366 - 14749482
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||| ||| |||||| | ||||||||| |  || |||||||| | ||||| ||||||| ||||||     || || |||||||||||||||      
T  14749366 agagagaagacctgtggattctgttgtaaggagagtcgatcagatggaggggagtcaaatcactaaaggcag-----aggaagacctagaaaaactataa 14749460  T
Q  396 gagaaactattaagaaggatct 417  Q
    |||||||||| |||||||||||    
T  14749461 gagaaactatcaagaaggatct 14749482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 407
Target Start/End: Original strand, 6889052 - 6889158
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||||||| |||| | | ||||||| ||||||||||||||||  |||||| | |||| ||||     ||||| ||  ||||||||||||||      
T  6889052 agagagaagacttgtggattatgtggtaaggacaataaattagatggaggatagtcaaaccacttgagg-----aagaggaaggcctagaaaaactataa 6889146  T
Q  396 gagaaactatta 407  Q
    ||||||||||||    
T  6889147 gagaaactatta 6889158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 411
Target Start/End: Complemental strand, 15489715 - 15489605
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    |||||||||| ||||||||| | || |||||||| || |||||||||||  ||||   ||||||||||||||     || || |||||||||||| ||      
T  15489715 agagagaagatttgtagattttgtattaaggagagtagattagatggaggatagttgaatcactagaggcag-----aggaagacctagaaaaacaataa 15489621  T
Q  396 gagaaactattaagaa 411  Q
    ||||||||||||||||    
T  15489620 gagaaactattaagaa 15489605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 21093811 - 21093879
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    |||| ||||||||| ||||| | |||||| |||| || || ||||||||  ||||||||||||||||||    
T  21093811 agagggaagacttggagattttgtagtaaagagagtagatcagatggaggatagtcagatcactagagg 21093879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 43475299 - 43475363
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcacta 360  Q
    ||||||||||| |||||||  | ||||||||||| || || ||||||||  ||||||||||||||    
T  43475299 agagagaagacctgtagatgttgtagtaaggagagtagatcagatggaggatagtcagatcacta 43475363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 417
Target Start/End: Original strand, 47147455 - 47147548
Alignment:
Q  319 tagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattggagaaactattaagaaggatct 417  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||||     || || ||||||||||||||| | ||||||||||||||| |||||    
T  47147455 tagtaaggagagtaaatcagatggagagtagtcggatcactagaggcag-----aggaagacctagaaaaactatagaagaaactattaagaaagatct 47147548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 21879374 - 21879308
Alignment:
Q  298 agagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| | ||||| |||||    
T  21879374 agagaagacatgtagattctttagtaaggagaatagattagatggagggtagtgaaatcaccagagg 21879308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 31961489 - 31961373
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||||||| |||||| |||| |||||| |  ||||||||||||| ||||| ||||||||||| |||     |  | |||||||||||||||      
T  31961489 agagagaagacttgtggattctgtagttaggagagtggattagatggagaggagtcaaatcactagaggtagg-----ggtagacctagaaaaactataa 31961395  T
Q  396 gagaaactattaagaaggatct 417  Q
    |||||||||||| ||| |||||    
T  31961394 gagaaactattaggaaagatct 31961373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 407
Target Start/End: Original strand, 28351618 - 28351724
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||| |||||| ||| ||||||||||| || || ||||||||  ||||||||| || |||||      ||||||| |||||||||||||||      
T  28351618 agagagaagacctgtagactctgtagtaaggagagtagatcagatggaggatagtcagattacaagagg-----tagagaaagacctagaaaaactataa 28351712  T
Q  396 gagaaactatta 407  Q
    ||||||||||||    
T  28351713 gagaaactatta 28351724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 406
Target Start/End: Complemental strand, 34233235 - 34233142
Alignment:
Q  308 tgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattggagaaactatt 406  Q
    |||||||| | ||||||||||| || || ||||||||  | |||||||||||||||||||     || ||||||||||||||||||  |||||||||||    
T  34233235 tgtagattatgtagtaaggagagtagatgagatggaggatcgtcagatcactagaggcag-----aggaaaacctagaaaaactatcagagaaactatt 34233142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 54470266 - 54470336
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggca 366  Q
    ||||||||||| |||| ||| | ||||||||||| ||||| | |||||||||||||| || ||||||||||    
T  54470266 agagagaagacatgtaaattatgtagtaaggagagtaaatcaaatggagagtagtcaaattactagaggca 54470336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 11389794 - 11389851
Alignment:
Q  307 ttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    ||||||||||| ||||||||||| || || ||||||| |||||||| |||||||||||    
T  11389794 ttgtagattctgtagtaaggagagtagataagatggaaagtagtcaaatcactagagg 11389851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 31897651 - 31897535
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    |||||| |||| ||| |||||| |||| |||||| |  ||||||||||| | ||||||||||||||||| |||     |  | |||||||||||||||      
T  31897651 agagagcagacctgtggattctgtagttaggagagtcgattagatggaggggagtcagatcactagaggtagg-----ggtagacctagaaaaactataa 31897557  T
Q  396 gagaaactattaagaaggatct 417  Q
    |||||||||||| |||||||||    
T  31897556 gagaaactattaggaaggatct 31897535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 8459258 - 8459187
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||| |||||||||| || |||||||| || |||| |||  ||||||||| ||||||| ||||||    
T  8459258 agagagaagacatgtagattctgtaataaggagagtagattacatgaggagtagtcaaatcactaaaggcag 8459187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 411
Target Start/End: Complemental strand, 13805488 - 13805378
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||| | |||||| | ||| ||||||| || || | ||||||  | |||||||||||||||||||     || ||||||||||||||||||      
T  13805488 agagagaagacctttagattttgtagcaaggagactagatcacatggaggattgtcagatcactagaggcag-----aggaaaacctagaaaaactataa 13805394  T
Q  396 gagaaactattaagaa 411  Q
    |||||||||| |||||    
T  13805393 gagaaactatgaagaa 13805378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 31339595 - 31339665
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    |||||||||||||||||||| | ||||||||| | || || | ||| |||||||||| ||||||||||||||    
T  31339595 agagagaagacttgtagattatgtagtaaggatagtagatcaaatgaagagtagtca-atcactagaggcag 31339665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 10209173 - 10209211
Alignment:
Q  379 acctagaaaaactattggagaaactattaagaaggatct 417  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  10209173 acctagaaaaactataagagaaactattaagaaggatct 10209211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 28497548 - 28497596
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggag 344  Q
    |||||||||||||||||||| | ||||||||||| || || ||||||||    
T  28497548 agagagaagacttgtagattatgtagtaaggagagtagatcagatggag 28497596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 42639243 - 42639175
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    ||||||||||||| | |||||| | |||||| |  |||||||||||||| | ||||| |||||||||||    
T  42639243 agagagaagacttatggattctgtggtaaggggggtaaattagatggaggggagtcaaatcactagagg 42639175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 36304037 - 36304108
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||| ||||||| ||||||||||||||||| || |||| ||| |||||||||| |||||||||||    
T  36304037 agagagaagacctgtagatgctttagtaaggagaatagatcagatagagggtagtcagattactagaggcag 36304108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 21200607 - 21200723
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||||| ||||||||||  |||||||||| || || | |||||||||||||| ||||||||     ||  |||| || ||||||||||||||||     
T  21200607 agagagaagacatgtagattctgcagtaaggagagtagatcacatggagagtagtcaaatcactag-----ggggagaggaagacctagaaaaactatta 21200701  T
Q  396 gagaaactattaagaaggatct 417  Q
    || |||||||| |||| |||||    
T  21200702 gacaaactatttagaaagatct 21200723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 3870667 - 3870619
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggag 344  Q
    |||||||||||||||||||||| |||| |||||| ||||| ||||||||    
T  3870667 agagagaagacttgtagattctatagttaggagagtaaatcagatggag 3870619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 26990350 - 26990388
Alignment:
Q  379 acctagaaaaactattggagaaactattaagaaggatct 417  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  26990350 acctagaaaaactattagagaaactatcaagaaggatct 26990388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 29374993 - 29375059
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactaga 362  Q
    ||||| ||||| |||||||| | ||||||||||  || |||||||||||| ||||| ||||||||||    
T  29374993 agagaaaagacctgtagattttgtagtaaggagtgtagattagatggagaatagtctgatcactaga 29375059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 33307187 - 33307243
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtca 352  Q
    ||||||||||| |||||||||| ||| ||| ||| ||||| |||||||| |||||||    
T  33307187 agagagaagacatgtagattctataggaagaagagtaaatcagatggagggtagtca 33307243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 36820128 - 36820084
Alignment:
Q  373 agaaaaacctagaaaaactattggagaaactattaagaaggatct 417  Q
    ||||| |||||||||||||||  |||||||||||||||| |||||    
T  36820128 agaaatacctagaaaaactataagagaaactattaagaaagatct 36820084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 42510237 - 42510169
Alignment:
Q  298 agagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggca 366  Q
    ||||||||| | |||||| | | ||||||||| || || ||||||||  ||||||||||||||||||||    
T  42510237 agagaagacctatagattttgtggtaaggagagtagatcagatggaggatagtcagatcactagaggca 42510169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 50249446 - 50249514
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    |||| |||||| |||||||||||||||||||||| || || |||||| |  |||||| ||||| |||||    
T  50249446 agagtgaagacatgtagattctttagtaaggagagtagatcagatgggggatagtcatatcaccagagg 50249514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 33561083 - 33561010
Alignment:
Q  294 agagagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||||| |||||||||| ||||||||||| || ||  ||||||| ||||||| ||||||||||||||    
T  33561083 agagagagaagacctgtagattctgtagtaaggagagtagatatgatggagggtagtcaaatcactagaggcag 33561010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 5338783 - 5338854
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||| ||||||| |||||||||||||| || || ||||||||  || ||||||||||||||||||    
T  5338783 agagagaagacctgtagatgctttagtaaggagagtagatcagatggaggatattcagatcactagaggcag 5338854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 38868941 - 38869057
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    |||||||| ||| ||||||||| |||  |||||| || ||||||||||| ||||||| |||| |||||||||  |||   || |||||||||||||||      
T  38868941 agagagaacactagtagattctctagcgaggagagtagattagatggagggtagtcaaatcattagaggcag--aag---aagacctagaaaaactataa 38869035  T
Q  396 gagaaactattaagaaggatct 417  Q
    |||||| ||||||||| |||||    
T  38869036 gagaaattattaagaaagatct 38869057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 43423778 - 43423846
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    |||||||||||||||||||| | ||||||| ||| || | |||||||| |||||||| |||||||||||    
T  43423778 agagagaagacttgtagattatgtagtaagtagagtagactagatggatagtagtcaaatcactagagg 43423846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 10569290 - 10569219
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||| |||||||||| ||||| ||||  || ||||||||||| ||| ||| ||||||||||||||    
T  10569290 agagagaagacctgtagattctgtagtacggagggtagattagatggagggtaatcaaatcactagaggcag 10569219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 13827793 - 13827722
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||  |||||||||| ||||||||||| || || | |||||   |||||||||||||||||||||    
T  13827793 agagagaagaagtgtagattctgtagtaaggagagtagatcatatggaacatagtcagatcactagaggcag 13827722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 28511977 - 28511924
Alignment:
Q  343 agagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattggagaaa 401  Q
    |||||||||||||||||||||||     ||||||| |||||||||||||||| ||||||    
T  28511977 agagtagtcagatcactagaggc-----agagaaagacctagaaaaactattagagaaa 28511924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 46388435 - 46388468
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggaga 329  Q
    |||||||||||||||||||||| |||||||||||    
T  46388435 agagagaagacttgtagattctgtagtaaggaga 46388468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 46394879 - 46394912
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggaga 329  Q
    |||||||||||||||||||||| |||||||||||    
T  46394879 agagagaagacttgtagattctgtagtaaggaga 46394912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 8796291 - 8796339
Alignment:
Q  319 tagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||| |||||  |||||||  |||||||||||||||||||||    
T  8796291 tagtaaggagagtaaatcggatggaggatagtcagatcactagaggcag 8796339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 32404749 - 32404681
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    ||||||||||| |||||||||| ||||||||||| || |  ||||||||  |||||| ||||| |||||    
T  32404749 agagagaagacctgtagattctatagtaaggagagtagagaagatggaggatagtcatatcacaagagg 32404681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 21870288 - 21870217
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||| |||||||| | ||||||||||| || || |||||||||||||||| ||||||| ||||||    
T  21870288 agagagaagacctgtagattttgtagtaaggagagtagataagatggagagtagtcaaatcactaaaggcag 21870217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 2079399 - 2079462
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcact 359  Q
    |||||||||| ||||||||| | ||||||||||| ||||||||||||||  | |||||||||||    
T  2079399 agagagaagatttgtagattatgtagtaaggagagtaaattagatggaggctggtcagatcact 2079462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 32913485 - 32913417
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    ||||| |||| ||||||||| | ||| ||||||| || ||||||||||| ||||||| |||||||||||    
T  32913485 agagaaaagagttgtagattatgtagcaaggagagtatattagatggagggtagtcaaatcactagagg 32913417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 411
Target Start/End: Original strand, 579477 - 579587
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    ||||||||| |||||||||| | ||||||||||| |  || ||||||||  ||||| |||||||||||||||     ||||| ||||  ||||||| |      
T  579477 agagagaaggcttgtagattatatagtaaggagagttgatcagatggaggatagtctgatcactagaggcag-----agaaagacctcaaaaaactgtaa 579571  T
Q  396 gagaaactattaagaa 411  Q
    ||||||||||||||||    
T  579572 gagaaactattaagaa 579587  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 14389391 - 14389324
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagag 363  Q
    ||||||||||| | |||| | | |||||||||||||| || ||||||||  |||||||||||||||||    
T  14389391 agagagaagacctatagactttgtagtaaggagaatagatcagatggaggatagtcagatcactagag 14389324  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Complemental strand, 10617382 - 10617341
Alignment:
Q  376 aaaacctagaaaaactattggagaaactattaagaaggatct 417  Q
    ||||||||||||||||||  ||||||| ||||||||||||||    
T  10617382 aaaacctagaaaaactataagagaaaccattaagaaggatct 10617341  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 6907050 - 6906982
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    ||||||||||| |||||||| | ||||||||||| || || ||||| || ||||||| ||||| |||||    
T  6907050 agagagaagacatgtagattttgtagtaaggagagtagatcagatgcagggtagtcaaatcacgagagg 6906982  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 16715332 - 16715403
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||| ||||| |||||||||||| ||| || || |||||| ||||||||| |||||||| |||||    
T  16715332 agagagaagacatgtaggttctttagtaagtagagtagatcagatggggagtagtcaaatcactagtggcag 16715403  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 16351515 - 16351553
Alignment:
Q  379 acctagaaaaactattggagaaactattaagaaggatct 417  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  16351515 acctagaaaaactattagagaaactattaagaaggatct 16351553  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 29520709 - 29520777
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    |||||||||||||||||||| | ||||||||||| || || ||||||||  |||||| ||||| |||||    
T  29520709 agagagaagacttgtagattttgtagtaaggagagtagatcagatggaggatagtcaaatcacaagagg 29520777  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 39051229 - 39051272
Alignment:
Q  324 aggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||    
T  39051229 aggagagtaaatcagatggagagtagtcaaatcactagaggcag 39051272  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 407
Target Start/End: Original strand, 32931034 - 32931126
Alignment:
Q  310 tagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattggagaaactatta 407  Q
    |||||||| ||||||||||| || || ||||||||  |||||| ||||||||||||||     || || ||||| |||||||||  ||||||||||||    
T  32931034 tagattctgtagtaaggagactagatcagatggaggatagtcatatcactagaggcag-----aggaagacctaaaaaaactatcagagaaactatta 32931126  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 29700351 - 29700403
Alignment:
Q  312 gattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    |||||| ||||||||||| || |||||||||||  |||||| |||||||||||    
T  29700351 gattctgtagtaaggagagtagattagatggaggatagtcatatcactagagg 29700403  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 6420713 - 6420642
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||||||||||| || ||||||||||| || || ||||| |   |||||||||||||||||||||    
T  6420713 agagagaagacttgtagatactgtagtaaggagagtagatcagatgaatgatagtcagatcactagaggcag 6420642  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 47848734 - 47848804
Alignment:
Q  297 gagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||||||| ||||| || |||||||| || || ||||||||  ||||| |||||||||||||||    
T  47848734 gagagaagacttgtaaattctgtactaaggagagtagatcagatggaggatagtctgatcactagaggcag 47848804  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 30144834 - 30144950
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcaggcaagagaaaaacctagaaaaactattg 395  Q
    |||||||||||||||||||||| ||||| | ||| || || |||||||| || |||| |||||||||| |     | |  || ||||| ||||||||||     
T  30144834 agagagaagacttgtagattctatagtacgaagagtagatcagatggagggtggtcaaatcactagagac-----aaaataagacctataaaaactattc 30144928  T
Q  396 gagaaactattaagaaggatct 417  Q
    |||||||||||||||| |||||    
T  30144929 gagaaactattaagaaagatct 30144950  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 19262656 - 19262586
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    ||||||||||| |||||||| | ||||||| ||| || || |||||||| ||||||| ||||||||||||||    
T  19262656 agagagaagacctgtagatt-tgtagtaagaagagtagatcagatggagtgtagtcaaatcactagaggcag 19262586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 34341596 - 34341531
Alignment:
Q  302 aagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagaggcag 367  Q
    |||||||||||||| | ||||||||| |  | |||||||||||  ||||||||| |||||||||||    
T  34341596 aagacttgtagattttgtagtaaggaaagaagattagatggaggatagtcagattactagaggcag 34341531  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 48202925 - 48202892
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggaga 329  Q
    |||||||||||||||||||||| |||||||||||    
T  48202925 agagagaagacttgtagattctgtagtaaggaga 48202892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 43282467 - 43282534
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    |||||||||||||| ||||||| ||| ||||||| || | |||||||||  |||||||||||| |||||    
T  43282467 agagagaagacttgcagattctgtaggaaggagagtaga-tagatggaggatagtcagatcacaagagg 43282534  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 44091 - 44023
Alignment:
Q  296 agagagaagacttgtagattctttagtaaggagaataaattagatggagagtagtcagatcactagagg 364  Q
    ||||||||||| |  ||||||| ||||||||||| || | |||||||||  ||||||||||||||||||    
T  44091 agagagaagaccttcagattctctagtaaggagagtagactagatggaggatagtcagatcactagagg 44023  T

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Target: scaffold0325 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 11936 - 11972
Alignment:
Q  381 ctagaaaaactattggagaaactattaagaaggatct 417  Q
    |||||||||||||  ||||||||||||||||||||||    
T  11936 ctagaaaaactataagagaaactattaagaaggatct 11972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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