View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1309_low_8 (Length: 419)

Name: NF1309_low_8
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1309_low_8
NF1309_low_8
[»] chr1 (22 HSPs)
chr1 (8-226)||(7438993-7439211)
chr1 (251-419)||(7438831-7438998)
chr1 (29-183)||(9425703-9425858)
chr1 (34-189)||(434920-435075)
chr1 (36-124)||(31577994-31578081)
chr1 (49-198)||(31767861-31768009)
chr1 (95-198)||(30527654-30527758)
chr1 (34-119)||(38091249-38091334)
chr1 (36-121)||(14118267-14118352)
chr1 (33-122)||(32556523-32556612)
chr1 (71-196)||(35814474-35814602)
chr1 (27-116)||(46939936-46940025)
chr1 (33-119)||(48779656-48779740)
chr1 (32-121)||(6950186-6950275)
chr1 (93-197)||(47578230-47578335)
chr1 (69-201)||(52225770-52225903)
chr1 (46-129)||(23404885-23404968)
chr1 (72-198)||(4869970-4870098)
chr1 (51-87)||(2996749-2996785)
chr1 (71-119)||(5820148-5820196)
chr1 (36-124)||(37865485-37865573)
chr1 (135-198)||(38091178-38091242)
[»] chr2 (13 HSPs)
chr2 (34-197)||(45203181-45203345)
chr2 (49-198)||(10696301-10696451)
chr2 (49-197)||(5867915-5868063)
chr2 (39-193)||(25314699-25314853)
chr2 (67-200)||(28185951-28186087)
chr2 (34-187)||(37267708-37267862)
chr2 (63-198)||(38308025-38308162)
chr2 (58-198)||(28816104-28816244)
chr2 (68-197)||(13378346-13378477)
chr2 (34-109)||(43050109-43050184)
chr2 (49-123)||(24166803-24166877)
chr2 (69-196)||(24510926-24511054)
chr2 (78-181)||(30904807-30904911)
[»] chr6 (19 HSPs)
chr6 (35-184)||(6978447-6978598)
chr6 (33-200)||(7591052-7591209)
chr6 (52-198)||(989501-989648)
chr6 (34-129)||(32826703-32826798)
chr6 (47-150)||(33240853-33240956)
chr6 (34-111)||(33450800-33450877)
chr6 (51-187)||(6541953-6542087)
chr6 (58-196)||(29389113-29389253)
chr6 (67-121)||(20207190-20207244)
chr6 (67-121)||(22101213-22101267)
chr6 (34-119)||(9330246-9330331)
chr6 (40-182)||(3049732-3049876)
chr6 (36-96)||(9540583-9540643)
chr6 (30-110)||(13214203-13214283)
chr6 (58-122)||(6890581-6890645)
chr6 (51-111)||(31596568-31596628)
chr6 (51-110)||(6355752-6355811)
chr6 (58-169)||(21974761-21974873)
chr6 (71-119)||(33148312-33148360)
[»] chr5 (16 HSPs)
chr5 (34-196)||(35323599-35323762)
chr5 (34-198)||(31859715-31859878)
chr5 (46-200)||(28503192-28503346)
chr5 (58-113)||(13271484-13271539)
chr5 (33-199)||(14872587-14872754)
chr5 (51-197)||(41149519-41149666)
chr5 (33-110)||(32177306-32177383)
chr5 (68-188)||(38290772-38290893)
chr5 (33-112)||(8217101-8217179)
chr5 (34-124)||(36183320-36183410)
chr5 (34-119)||(17223063-17223148)
chr5 (45-152)||(7765206-7765314)
chr5 (36-123)||(33043864-33043951)
chr5 (69-119)||(40491706-40491756)
chr5 (33-110)||(35631224-35631301)
chr5 (78-122)||(30124541-30124585)
[»] chr7 (14 HSPs)
chr7 (33-162)||(40256803-40256933)
chr7 (34-196)||(2391580-2391743)
chr7 (34-182)||(44453594-44453743)
chr7 (36-162)||(35356357-35356483)
chr7 (50-198)||(3255078-3255227)
chr7 (31-119)||(17115876-17115964)
chr7 (34-119)||(22713451-22713535)
chr7 (48-182)||(35424848-35424983)
chr7 (69-129)||(12426990-12427051)
chr7 (126-187)||(26971337-26971398)
chr7 (69-129)||(22923104-22923164)
chr7 (91-174)||(40379408-40379491)
chr7 (37-94)||(22565281-22565338)
chr7 (70-110)||(23750421-23750461)
[»] chr3 (22 HSPs)
chr3 (69-198)||(33513328-33513457)
chr3 (51-198)||(25123235-25123383)
chr3 (33-183)||(36692838-36692988)
chr3 (35-183)||(36679223-36679371)
chr3 (40-196)||(26665427-26665585)
chr3 (34-197)||(51203161-51203325)
chr3 (33-193)||(23771673-23771835)
chr3 (82-196)||(15462067-15462182)
chr3 (35-124)||(51715008-51715097)
chr3 (35-196)||(30670794-30670957)
chr3 (33-196)||(43726563-43726727)
chr3 (65-120)||(43751786-43751841)
chr3 (51-118)||(1750080-1750147)
chr3 (34-121)||(7925339-7925426)
chr3 (40-121)||(25838064-25838145)
chr3 (36-101)||(42088017-42088082)
chr3 (71-122)||(31188036-31188087)
chr3 (35-74)||(43394636-43394675)
chr3 (58-176)||(44053382-44053501)
chr3 (35-121)||(18395498-18395583)
chr3 (134-200)||(22460668-22460734)
chr3 (63-119)||(32998773-32998829)
[»] chr8 (17 HSPs)
chr8 (76-193)||(7229010-7229128)
chr8 (36-124)||(37507535-37507623)
chr8 (66-198)||(9045632-9045765)
chr8 (34-198)||(27157623-27157788)
chr8 (58-197)||(7685450-7685589)
chr8 (69-152)||(34098414-34098497)
chr8 (63-200)||(6029985-6030123)
chr8 (34-162)||(39039700-39039829)
chr8 (82-121)||(3103786-3103825)
chr8 (32-119)||(7632648-7632735)
chr8 (57-122)||(44173166-44173231)
chr8 (64-119)||(40899651-40899706)
chr8 (58-112)||(39555878-39555932)
chr8 (93-162)||(42183714-42183784)
chr8 (35-112)||(9748327-9748404)
chr8 (33-109)||(34677205-34677281)
chr8 (39-119)||(40506615-40506695)
[»] chr4 (11 HSPs)
chr4 (33-143)||(7257295-7257406)
chr4 (34-129)||(9603870-9603965)
chr4 (71-197)||(782326-782453)
chr4 (39-109)||(39791202-39791272)
chr4 (77-129)||(3664229-3664281)
chr4 (126-198)||(27317073-27317145)
chr4 (49-163)||(41945198-41945312)
chr4 (64-122)||(39927515-39927573)
chr4 (33-106)||(24083160-24083233)
chr4 (30-75)||(37211001-37211046)
chr4 (78-198)||(55301109-55301229)
[»] scaffold0071 (1 HSPs)
scaffold0071 (82-196)||(10-125)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 7439211 - 7438993
Alignment:
Q  8 cgaataatatggctacgaaaaatgatcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtt 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7439211 cgaaaaatatggctacgaaaaatgatcattacttttctcatcctatgagattctcgcgcgtcctattcaaattctaaaatctaaaatatttcaacgtgtt 7439112  T
Q  108 tttgaaggttttatgggattttatacagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaacggacgcaaa 207  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||  |||    
T  7439111 tttgaaggttttatgggattttatacggttcggattataaaatccgaattacataaggcgcgtgagaaactcatagggtggaaaaagaaacggacaaaaa 7439012  T
Q  208 aaatgttaatggacccaag 226  Q
    |||||||||||||||||||    
T  7439011 aaatgttaatggacccaag 7438993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 251 - 419
Target Start/End: Complemental strand, 7438998 - 7438831
Alignment:
Q  251 cccaagattaaagtggccaacaccgataccaaaagctcattatgcattgcatttggaaaattgtttttcccacttcatacaaaggtnnnnnnntactatg 350  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||    
T  7438998 cccaagattaaagtggccaacaccaataccaaaagctcattatgcattgcatttggaaaattgtttttcccacttcatacaaagct-aaaaaatactatg 7438900  T
Q  351 aaatgacaagtttaatccaaacggcagttgactgccgtcattttatagtgtttcttagctttgtttgaa 419  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7438899 aaatgacaagtttaacccaaacggcagttgactgccgtcattttatagtgtttcttagctttgtttgaa 7438831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 9425858 - 9425703
Alignment:
Q  29 atgatcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggattt 128  Q
    |||| |||||||||||||| |||||||| || || || | | | ||||||||||||||||  ||||||||||   ||||||| ||||||||||| |||||    
T  9425858 atgaccattacttttctcaccctatgagcttttcacgtgccttgttcgaattctaaaatccgaaatatttcagtatgtttttaaaggttttatgagattt 9425759  T
Q  129 t-atacagttcggattataaaattcgaactacataagacgcgtgagaaactcatag 183  Q
    | ||| |||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  9425758 ttatatagttcggattttaaaatcagaactacataagacgcgtgagaagctcatag 9425703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 435075 - 434920
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg-ggattttata 132  Q
    ||||||||||   ||| |||||| ||||| |||| |||||| || |||||||||||||||||||||||| ||||||||||| ||||| | || ||| ||     
T  435075 cattactttttctatcatatgagcttctcacgcgccctatttgagttctaaaatctaaaatatttcaacatgtttttgaagtttttacgaggttttcatg 434976  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtgga 189  Q
    ||| ||||||| ||||| || |||| |||| ||||||||| ||||| |||| |||||    
T  434975 cagctcggattctaaaa-tccaactgcataggacgcgtgaaaaacttatagagtgga 434920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 31578081 - 31577994
Alignment:
Q  36 ttacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggg 124  Q
    ||||||||| || |||||||| |||||||||| |||||| | |||||||||||  ||||||||||||||||||||| ||||||||||||    
T  31578081 ttacttttccca-cctatgagcttctcgcgcgccctatttggattctaaaatccgaaatatttcaacgtgtttttggaggttttatggg 31577994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 31768009 - 31767861
Alignment:
Q  49 cctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg-ggattttatacagttcggattataa 147  Q
    |||||| | ||||| |||| |||||| | ||| |||||||  ||||||||||||||||||||||| |||||||| || |||||| |||| |||||| |||    
T  31768009 cctatgcgcttctcacgcgccctatttggattttaaaatccgaaatatttcaacgtgtttttgaaagttttatgaggtttttatgcagtgcggattctaa 31767910  T
Q  148 aattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaac 198  Q
    |||  ||||| |||| ||| |||||||||| |||  | |||||||||||||    
T  31767909 aatctgaactgcataggacacgtgagaaacgcat--gatggaaaaagaaac 31767861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 198
Target Start/End: Complemental strand, 30527758 - 30527654
Alignment:
Q  95 atttcaacgtgtttttgaaggttttatgggatttt-atacagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaa 193  Q
    ||||||||||||||||| |||||||||||| |||| || | ||||||||| |||||| | | || |||| |||||||||||||| |||||| ||| ||||    
T  30527758 atttcaacgtgtttttggaggttttatgggttttttatgccgttcggattctaaaatccaatctgcataggacgcgtgagaaacacataggatgggaaaa 30527659  T
Q  194 gaaac 198  Q
    |||||    
T  30527658 gaaac 30527654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 38091334 - 38091249
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    ||||||||||| |||||| |||  ||||||||||||||||||  ||||||||||   |||||||||| |||||| |||||||||||    
T  38091334 cattacttttcacatcctgtgacgttctcgcgcgtcctattcagattctaaaattcgaaatatttcaccgtgttattgaaggtttt 38091249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 14118352 - 14118267
Alignment:
Q  36 ttacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat 121  Q
    ||||||||||||| ||||||  || ||  |||||||||| ||||| |||||||  ||||||||||| |||||||||||| ||||||    
T  14118352 ttacttttctcattctatgaacttttcatgcgtcctatttgaattttaaaatccgaaatatttcaatgtgtttttgaagattttat 14118267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 32556612 - 32556523
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg 122  Q
    ||||||||||| | |||||||||| ||||||| ||||||||||| ||| |||||||| |||||||  ||||| |||| || | |||||||    
T  32556612 tcattactttttttatcctatgagtttctcgcacgtcctattcggattttaaaatctgaaatattgtaacgtattttggaggtttttatg 32556523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 35814602 - 35814474
Alignment:
Q  71 tattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggt-tttatgg--gattttatacagttcggattataaaattcgaactacataagacg 167  Q
    |||||| ||||||||||| ||||| ||| ||||||||||||||||| ||||||   |  |||||   | || |||||||||||  ||||| |||| ||||    
T  35814602 tattcggattctaaaatccaaaatgttttaacgtgtttttgaaggtgtttatgaatgtatttatgtcgatcagattataaaatctgaactgcataggacg 35814503  T
Q  168 cgtgagaaactcatagggtggaaaaagaa 196  Q
    || |||||||||||||||| |||||||||    
T  35814502 cgcgagaaactcatagggtagaaaaagaa 35814474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 46939936 - 46940025
Alignment:
Q  27 aaatgatcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggt 116  Q
    ||||| ||||||| ||||||| |||||||  |||| | |  |||||||||||||||||||||| |||| ||||||  |||||||||||||    
T  46939936 aaatggtcattacctttctcaccctatgaatttcttgtggatcctattcgaattctaaaatctgaaatgtttcaatatgtttttgaaggt 46940025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 48779656 - 48779740
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    ||||||||||| |||||  ||||| | |||||||  |||||||| ||||||||||   |||||||||||| ||||||||||||||||    
T  48779656 tcattacttttttcatcacatgagttcctcgcgc--cctattcggattctaaaattcgaaatatttcaacatgtttttgaaggtttt 48779740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 6950186 - 6950275
Alignment:
Q  32 atcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat 121  Q
    |||||||||||| ||||||||| |  ||||||| | |  |||||| ||||||||||  ||||||||||||||| ||||| || |||||||    
T  6950186 atcattacttttttcatcctatcaagttctcgcacttattattcggattctaaaattcaaaatatttcaacgtatttttaaaagttttat 6950275  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 47578230 - 47578335
Alignment:
Q  93 atatttcaacgtgtttttgaaggttttat-gggattttatacagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaa 191  Q
    |||||||||||||||||| || ||||||| ||| |||||||  |||| |||| ||||||   ||||| ||||||||||||| |||||  |||| | ||||    
T  47578230 atatttcaacgtgtttttaaaagttttatggggtttttataaggttcagattctaaaatcataactatataagacgcgtgaaaaacttgtaggatagaaa 47578329  T
Q  192 aagaaa 197  Q
    ||||||    
T  47578330 aagaaa 47578335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 52225903 - 52225770
Alignment:
Q  69 cctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggattttata-cagttcggattataaaattcgaactacataagacg 167  Q
    |||||||||||| ||||||   |||||||||||| |||||||| |  || |||| ||||||  | ||||| ||||| ||||||  ||||||||||| |||    
T  52225903 cctattcgaattttaaaattcgaaatatttcaacatgtttttggatattgtatgagatttttaagcagtttggattctaaaatctgaactacataaaacg 52225804  T
Q  168 cgtgagaaactcatagggtggaaaaagaaacgga 201  Q
     ||||||| ||| |||||| | || |||||||||    
T  52225803 tgtgagaacctcgtagggttggaagagaaacgga 52225770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 23404885 - 23404968
Alignment:
Q  46 catcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggatttt 129  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||  |||  ||||||| |||||||| | | |||||||| ||||    
T  23404885 catcctatgagtttctcgcacgtcatattcgaattttaaaatccgaaacgtttcaacatgtttttggaagatttatggggtttt 23404968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 4869970 - 4870098
Alignment:
Q  72 attcgaattctaaaatctaaaatatttcaacgtgttttt--gaaggttttatgggattttatacagttcggattataaaattcgaactacataagacgcg 169  Q
    ||||| ||| |||||||  |||| |||||||||||||||  | || ||||||| | ||| || | ||| | ||| |||||| | |||||||||||||| |    
T  4869970 attcggattttaaaatccgaaatttttcaacgtgtttttttggagattttatgaggtttcatgcggttagaattttaaaatccaaactacataagacgtg 4870069  T
Q  170 tgagaaactcatagggtggaaaaagaaac 198  Q
    | ||||||||||||| || ||| ||||||    
T  4870070 taagaaactcataggatgaaaagagaaac 4870098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 2996785 - 2996749
Alignment:
Q  51 tatgagattctcgcgcgtcctattcgaattctaaaat 87  Q
    |||||| |||||||||||||| |||||||||||||||    
T  2996785 tatgagtttctcgcgcgtcctgttcgaattctaaaat 2996749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 5820196 - 5820148
Alignment:
Q  71 tattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    |||||||||||||||||| ||||| ||||||| ||||||  ||||||||    
T  5820196 tattcgaattctaaaatccaaaatgtttcaacatgttttcaaaggtttt 5820148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 37865573 - 37865485
Alignment:
Q  36 ttacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggg 124  Q
    ||||||| ||||| ||||||| |||||  | | |||||||| ||| |||||| | |||| | ||| |||||||||| ||||||||||||    
T  37865573 ttactttactcattctatgagtttctcatgtgccctattcggattttaaaatttgaaatgtctcagcgtgtttttggaggttttatggg 37865485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 38091242 - 38091178
Alignment:
Q  135 gttcggattataaaattcgaactacataagacgc-gtgagaaactcatagggtggaaaaagaaac 198  Q
    ||||||||| |||||| | |||| |||| | ||| |||||||||||||| |||||||||||||||    
T  38091242 gttcggattctaaaatccaaactgcatagggcgcagtgagaaactcatacggtggaaaaagaaac 38091178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 45203181 - 45203345
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggatttt-ata 132  Q
    ||||||||||||||   | |||| ||||||  || |||||||| |||||||||||  ||||||||||| ||||||||  ||||||||||||||||| ||     
T  45203181 cattacttttctcacaatgtgaggttctcggacgccctattcggattctaaaatccgaaatatttcaatgtgtttttcgaggttttatgggatttttatg 45203280  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaa 197  Q
     |||||||||| ||||||||||||  |||| |||||||||||||||||||||||| |||||||||    
T  45203281 tagttcggattctaaaattcgaacggcataggacgcgtgagaaactcatagggtgaaaaaagaaa 45203345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 10696451 - 10696301
Alignment:
Q  49 cctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttta-tgggattttatacagttcggattataa 147  Q
    |||||||  |||||||||   ||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||| |||||| ||||| ||||| |||    
T  10696451 cctatgaagttctcgcgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagtttggattctaa 10696352  T
Q  148 aattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaac 198  Q
    ||| | |||| |||| | | | ||||||||||||||||||  |||||||||    
T  10696351 aatccaaactgcatagggcacatgagaaactcatagggtgtgaaaagaaac 10696301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 5867915 - 5868063
Alignment:
Q  49 cctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg-ggattttatacagttcggattataa 147  Q
    ||||| || |||||||| |  |||||||| || |||||||| ||||||||||||||||||||| || ||||||| || |||||| ||||||||||| |||    
T  5867915 cctataagcttctcgcgtgctctattcgattt-taaaatctgaaatatttcaacgtgtttttggagattttatgtgggttttatgcagttcggattctaa 5868013  T
Q  148 aattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaa 197  Q
    |||||||| |  ||| | ||||||||||||||||||| ||  ||||||||    
T  5868014 aattcgaattgtatagggcgcgtgagaaactcataggatgagaaaagaaa 5868063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 25314699 - 25314853
Alignment:
Q  39 cttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggg-attttatacagtt 137  Q
    |||||| || |||||||| ||||||| || |||||||| ||||||||||| |||||| |||| ||||||||   | ||||| ||||  |||||| |||||    
T  25314699 cttttcccaccctatgagtttctcgcacgccctattcggattctaaaatccaaaatacttcatcgtgttttcagaagttttctgggctttttatgcagtt 25314798  T
Q  138 cggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaa 193  Q
    |||||| ||||||  ||| | |||||| |||||||| |||||||||||| ||||||    
T  25314799 cggattctaaaatctgaattgcataaggcgcgtgag-aactcatagggttgaaaaa 25314853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 28185951 - 28186087
Alignment:
Q  67 gtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgg-gattttatacagttcggat--tataaaattcgaactacataa 163  Q
    |||| ||||||||| |||||||  ||||||||||| || |||||  || |||||||| |||| ||| | ||||||||  | |||||| |||| | ||||     
T  28185951 gtcccattcgaattataaaatccgaaatatttcaatgtattttttgagattttatggagattctatgctgttcggatattctaaaatccgaattgcatat 28186050  T
Q  164 gacgcgtgagaaactcatagggtggaaaaagaaacgg 200  Q
    |||||||||||| |||||||||||| |||||||||||    
T  28186051 gacgcgtgagaatctcatagggtgggaaaagaaacgg 28186087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 37267708 - 37267862
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggga-ttttata 132  Q
    ||||||||||  || | |||||| |||||| | | |||||| | |||||||||||  |||||||| |||||||||| | |||||||||| || |||||||    
T  37267708 cattactttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaaatattttaacgtgttttgggaggttttatgagatttttata 37267807  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtg 187  Q
    |||||| |||| || |||  ||| | |||| |||| || |||| |||||||||||    
T  37267808 cagttcagattctataatctgaaatgcataggacgtgtaagaagctcatagggtg 37267862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 38308162 - 38308025
Alignment:
Q  63 gcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttg-aaggttttat-gggattttatacagttcggattataaaattcgaactaca 160  Q
    ||||| ||||||| | || |||||||| |||| |||||||||||||||| ||| |||||| |||  ||||| | ||||||||| || ||||| |||| ||    
T  38308162 gcgcgccctattctagttttaaaatctgaaatgtttcaacgtgtttttgaaagtttttatagggtgtttatgccgttcggattctataattcaaactgca 38308063  T
Q  161 taagacgcgtgagaaactcatagggtggaaaaagaaac 198  Q
    |||||| |  |||||| | ||||||||| |||||||||    
T  38308062 taagacacacgagaaattaatagggtgggaaaagaaac 38308025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 28816244 - 28816104
Alignment:
Q  58 ttctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggatt-ttatacagttcggattataaaattcgaac 156  Q
    |||||| ||| ||||||| |||| |||||| | ||||||||||||||| ||||| ||||||||| ||||| || | || |||  ||| |||||||| |||    
T  28816244 ttctcgtgcgccctattcaaattataaaattttaaatatttcaacgtg-ttttggaggttttataggattcttgtgcaattcaaattttaaaattcaaac 28816146  T
Q  157 tacataagacgcgtgagaaactcatagggtggaaaaagaaac 198  Q
    |  ||||| | ||||||||||| ||| ||||  |||||||||    
T  28816145 tgtataaggcacgtgagaaacttataaggtgagaaaagaaac 28816104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 13378477 - 13378346
Alignment:
Q  68 tcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt--atgggattttatacagttcggattataaaattcgaactacataaga 165  Q
    ||||||||| ||| |||||||| ||||||||||| ||||||||| |||||||  |     |||||| || |||||||| |||||||| || | |||| |     
T  13378477 tcctattcggattataaaatctgaaatatttcaatgtgtttttggaggtttttgaattttttttatgcaattcggattctaaaattcaaattgcataggg 13378378  T
Q  166 cgcgtgagaaactcatagggtggaaaaagaaa 197  Q
     | ||||||| |||||||| ||||||||||||    
T  13378377 tgtgtgagaacctcataggatggaaaaagaaa 13378346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 43050109 - 43050184
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttt 109  Q
    ||||||||||| || |||||||| |||| || || | |||||| ||| |||||||| |||| ||||||||||||||    
T  43050109 cattacttttcccaccctatgagtttcttgcacgccttattcggattttaaaatctgaaatgtttcaacgtgtttt 43050184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 24166803 - 24166877
Alignment:
Q  49 cctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgg 123  Q
    |||||||| ||||| |||| |||||||| ||||| ||||   |||||||||||| |||||||  |||||||||||    
T  24166803 cctatgagtttctcacgcgccctattcggattcttaaattcgaaatatttcaacatgtttttagaggttttatgg 24166877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 24510926 - 24511054
Alignment:
Q  69 cctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggat-tttatacagttcggattataaaattcgaactacataagacg 167  Q
    |||||||| ||| |||||||| |||||||| ||||| |||| || | ||||||||||| ||||| | ||| | ||| || |||||||||| |||| |       
T  24510926 cctattcggattttaaaatctgaaatatttaaacgtattttggaggtttttatgggatgtttatgccgtttgaattctataattcgaactgcatagggaa 24511025  T
Q  168 cgtgagaaactcatagggtggaaaaagaa 196  Q
    || |||||| ||||||| || ||||||||    
T  24511026 cgcgagaaattcataggttgaaaaaagaa 24511054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 30904807 - 30904911
Alignment:
Q  78 attctaaaatctaaaatatttcaacgtgtttttgaaggttttatg-ggattttatacagttcggattataaaattcgaactacataagacgcgtgagaaa 176  Q
    |||| ||||||| ||||||||||| ||||||||| || ||| ||| || ||| |||||||| | ||| | |||| | |||| |||||||||| ||||||     
T  30904807 attccaaaatctgaaatatttcaatgtgtttttgcagatttgatgaggttttcatacagtttgaattttgaaatccaaactgcataagacgcatgagaac 30904906  T
Q  177 ctcat 181  Q
    |||||    
T  30904907 ctcat 30904911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 6978598 - 6978447
Alignment:
Q  35 attacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgt-gtttttgaaggttttatgg-gattttata 132  Q
    |||||||||  ||||||||||| |||||| |||||||||| | |||||||||||||||||||||||||||  |||||| ||||||||||| | ||||||     
T  6978598 attactttttccatcctatgagtttctcgtgcgtcctatttggattctaaaatctaaaatatttcaacgtaatttttggaggttttatggagtttttatg 6978499  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcatagg 184  Q
    ||||| ||||| |||||| ||||||  |||||||||||||||| ||||||||    
T  6978498 cagtttggattctaaaatccgaactttataagacgcgtgagaagctcatagg 6978447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 7591052 - 7591209
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggattttata 132  Q
    |||||||||||| ||||||||||  ||| |||||||||||||   |||||||||||  ||||||||||||||||||||  ||||||||||              
T  7591052 tcattacttttcccatcctatgaatttcccgcgcgtcctattaagattctaaaatccgaaatatttcaacgtgttttttgaggttttatg---------- 7591141  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaacgg 200  Q
    ||||||||||| |||||| | |||| |||| ||||| |||||| |||||||| |||||||||||||||    
T  7591142 cagttcggattctaaaatccaaactgcataggacgcttgagaagctcataggatggaaaaagaaacgg 7591209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 989501 - 989648
Alignment:
Q  52 atgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat-gggattttatacagttcggattataaaat 150  Q
    ||||| ||||||| || |||||||  | |||||||||| ||||||||||||||||||||| || |||||| ||| |||||| ||||||||||| ||||||    
T  989501 atgagcttctcgcacgccctattcagaatctaaaatctgaaatatttcaacgtgtttttggagattttatgggggttttatgcagttcggattctaaaat 989600  T
Q  151 tcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaac 198  Q
     ||||||||||| |  || |||||| ||| ||||| || |||||||||    
T  989601 ccgaactacatagggtgcatgagaagctcgtagggagggaaaagaaac 989648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 32826798 - 32826703
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggatttt 129  Q
    ||||||||||  ||| ||||||| ||||||||||| ||||| |||||||||||| | ||||||||||||| ||||||| ||||||||||| |||||    
T  32826798 cattactttttccattctatgagtttctcgcgcgttctatttgaattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttt 32826703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 33240956 - 33240853
Alignment:
Q  47 atcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaagg-ttttatgggat-tttatacagttcggatta 144  Q
    |||||||||| |||||| ||| |||||||| |||||||||||  ||||||||||||  ||||||||||| ||||||||| | |||||||||||||||||     
T  33240956 atcctatgagtttctcgtgcgccctattcggattctaaaatccgaaatatttcaac--gtttttgaaggtttttatggggtatttatacagttcggattc 33240859  T
Q  145 taaaat 150  Q
    ||||||    
T  33240858 taaaat 33240853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 33450800 - 33450877
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttg 111  Q
    ||||| |||||| |||||||||| |||| |||||||||||||| ||||||||||   |||||||||||||||||||||    
T  33450800 cattaattttcttatcctatgagcttcttgcgcgtcctattcggattctaaaattcgaaatatttcaacgtgtttttg 33450877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 6542087 - 6541953
Alignment:
Q  51 tatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggat-tttatacagttcggattataaaa 149  Q
    |||||| |||||| | |||||||||  ||||||||||  ||||||||| |||||| |||||||| ||||||||  | |||||   ||||||||| || ||    
T  6542087 tatgagtttctcgtgtgtcctattcagattctaaaattcaaaatattttaacgtgcttttgaagattttatggagtatttat---gttcggattttataa 6541991  T
Q  150 ttcgaactacataagacgcgtgagaaactcatagggtg 187  Q
    | ||||||||||||| |||| |||||||| ||||||||    
T  6541990 tccgaactacataaggcgcgcgagaaactgatagggtg 6541953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 29389253 - 29389113
Alignment:
Q  58 ttctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt--atgggattttatacagttcggattataaaattcgaa 155  Q
    ||||||| || |||||||  ||| |||||||  |||| ||||||||||||||||||||||||   ||||  ||||| | ||||||||| || ||| ||||    
T  29389253 ttctcgcacgccctattcagattttaaaatccgaaatgtttcaacgtgtttttgaaggtttttattgggtgtttatgctgttcggattttataatccgaa 29389154  T
Q  156 ctacataagacgcgtgagaaactcatagggtggaaaaagaa 196  Q
    ||  ||| |||| | |||||||||||||||||| |||||||    
T  29389153 ctgtataggacgtgcgagaaactcatagggtgggaaaagaa 29389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 20207244 - 20207190
Alignment:
Q  67 gtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat 121  Q
    |||||||||  |||||||||||| |||||||||||||||||||||||| ||||||    
T  20207244 gtcctattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat 20207190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 22101267 - 22101213
Alignment:
Q  67 gtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat 121  Q
    |||||||||  |||||||||||| |||||||||||||||||||||||| ||||||    
T  22101267 gtcctattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat 22101213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 9330331 - 9330246
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    |||||||||| | | | |||||| ||||||||||  |||||||||| || |||||  ||||||||||| |||||||||||||||||    
T  9330331 cattactttttttaccttatgagtttctcgcgcgctctattcgaatgctgaaatccgaaatatttcaatgtgtttttgaaggtttt 9330246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 3049732 - 3049876
Alignment:
Q  40 ttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaag-gttttatgggat-tttatacagtt 137  Q
    ||||||||||||||||| || |||| |||| ||||| |||| ||||||  ||| | ||| ||||||||||||| |  ||||||||| | ||||||| |||    
T  3049732 ttttctcatcctatgagtttttcgcacgtcatattcaaattttaaaattcaaatttttttaacgtgtttttgatgatttttatgggttgtttataccgtt 3049831  T
Q  138 cggattataaaattcgaactacataagacgcgtgagaaactcata 182  Q
      |||| || |||||||| | |||||||| || ||||||||||||    
T  3049832 aagattctataattcgaaatgcataagacacgcgagaaactcata 3049876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 9540643 - 9540583
Alignment:
Q  36 ttacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatat 96  Q
    ||||||||||||||||||||| ||||| |||| |||||||  |||||||||||| ||||||    
T  9540643 ttacttttctcatcctatgagtttctcacgcgccctattcagattctaaaatctgaaatat 9540583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 13214283 - 13214203
Alignment:
Q  30 tgatcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgttttt 110  Q
    |||||||||||||||||||| |||  | || |||||| ||||||||  ||| |||||||  ||||||||||||||||||||    
T  13214283 tgatcattacttttctcatcttatatgtttgtcgcgcatcctattcagattttaaaatccgaaatatttcaacgtgttttt 13214203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 6890645 - 6890581
Alignment:
Q  58 ttctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg 122  Q
    ||||||| | ||||||| | |||  ||||||| ||||||||||| ||||||||||||||||||||    
T  6890645 ttctcgcacttcctatttggatttcaaaatctgaaatatttcaatgtgtttttgaaggttttatg 6890581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 31596628 - 31596568
Alignment:
Q  51 tatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttg 111  Q
    |||||| |||| | ||| |||||||||||| |||||||| |||| ||||||||||||||||    
T  31596628 tatgagtttcttgtgcgccctattcgaattttaaaatctgaaatgtttcaacgtgtttttg 31596568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 6355811 - 6355752
Alignment:
Q  51 tatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgttttt 110  Q
    |||||| |||||| | |||||||| ||||| |||||||||||||||||||| || |||||    
T  6355811 tatgagtttctcgtgtgtcctatttgaattttaaaatctaaaatatttcaatgtattttt 6355752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 21974873 - 21974761
Alignment:
Q  58 ttctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggat-tttatacagttcggattataaaattcgaac 156  Q
    ||||||| ||| ||||||| ||| |||||||  |||||||| ||| | ||||| ||| ||||||  ||| ||||| | ||| |||||||| ||| |||||    
T  21974873 ttctcgcacgttctattcgcattttaaaatccgaaatattttaacatattttttaagtttttataagatatttatgccgtttggattatacaatccgaac 21974774  T
Q  157 tacataagacgcg 169  Q
    |||||| ||||||    
T  21974773 tacataggacgcg 21974761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 33148360 - 33148312
Alignment:
Q  71 tattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    |||||| |||||||||  | ||||||||||||||||||||| |||||||    
T  33148360 tattcggattctaaaaattgaaatatttcaacgtgtttttggaggtttt 33148312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 35323599 - 35323762
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttta-tgggattttata 132  Q
    ||||||||||| || | ||||||||||||| |||||||||||  |||||||||||  |||||||||||||| |||||||||||||||  ||| ||||||     
T  35323599 cattacttttcccaccttatgagattctcgtgcgtcctattcagattctaaaatccgaaatatttcaacgtatttttgaaggttttacagggtttttatg 35323698  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaa 196  Q
    ||||||||||| ||| || |||||| |||  ||||| ||| || |||||||| |||||||||||    
T  35323699 cagttcggattctaacatacgaactgcatgggacgcctgaaaatctcataggatggaaaaagaa 35323762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 31859715 - 31859878
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggattttatac 133  Q
    ||||||||||  |||| |||||| |||||| ||| |||||||| | |||||||||  ||||||| |||| | |||||| || ||||||||| |||| | |    
T  31859715 cattacttttgccatcttatgagcttctcgtgcgccctattcggactctaaaatccgaaatattccaacttatttttggagattttatggggtttt-tgc 31859813  T
Q  134 agttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaac 198  Q
    |||| ||||| |||||| ||||||||||| |  ||||||||| ||||||||||| ||||||||||    
T  31859814 agtttggattctaaaatccgaactacatatggtgcgtgagaagctcatagggtgaaaaaagaaac 31859878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 28503346 - 28503192
Alignment:
Q  46 catcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgg-gattttatacagttcggatta 144  Q
    ||||||||||| ||||||||   | ||||||||||||||||||| |||||||||||||| |||| || | |||||||| |  ||||| | ||||| |||     
T  28503346 catcctatgagtttctcgcgac-cttattcgaattctaaaatctgaaatatttcaacgtattttggaggtttttatggagtatttatgccgttcgaattt 28503248  T
Q  145 taaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaacgg 200  Q
    || ||| | |||| |||| ||||||||| ||||||||||| |||||||||||||||    
T  28503247 tataatccaaactgcataggacgcgtgaaaaactcataggatggaaaaagaaacgg 28503192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 13271539 - 13271484
Alignment:
Q  58 ttctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaa 113  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  13271539 ttctcgcgcgtcctatttgaattctaaaatctgaaatatttcaacgtgtttttgaa 13271484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 14872587 - 14872754
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat-gggattttat 131  Q
    |||||||||||| || ||||| || |||||| |||  || ||  |||||||||||| |||||||||||||||||||||  ||||||||| ||| ||||||    
T  14872587 tcattacttttcccaccctattaggttctcgtgcgctctgtttaaattctaaaatccaaaatatttcaacgtgtttttagaggttttatagggtttttat 14872686  T
Q  132 acagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaacg 199  Q
    | |||||||||| |||||| | || | |||| | |||   | ||| ||||||||||| ||||||||||    
T  14872687 atagttcggattctaaaatccaaattgcatagggcgcagaaaaaaatcatagggtgggaaaagaaacg 14872754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 197
Target Start/End: Original strand, 41149519 - 41149666
Alignment:
Q  51 tatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggga-ttttatacagttcggattataaaa 149  Q
    |||||| |||||| | | |||||| ||||||||||||| || |||||||| |||||||||||| ||||||||||| |||||| | ||||  ||| |||||    
T  41149519 tatgagcttctcgtgtgccctatttgaattctaaaatccaacatatttcatcgtgtttttgaaagttttatgggatttttatgcggttcaaattctaaaa 41149618  T
Q  150 ttcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaa 197  Q
    | |||| | |||| | ||||||||||| | |||||||  |||||||||    
T  41149619 tccgaattgcatagggcgcgtgagaaatttatagggttaaaaaagaaa 41149666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 32177383 - 32177306
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgttttt 110  Q
    |||||||||||||||||||||||| ||||| | || |||||||| |||||||||||| |||| ||| ||||| |||||    
T  32177383 tcattacttttctcatcctatgagtttctcacacgccctattcgtattctaaaatctgaaatgttttaacgtattttt 32177306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 188
Target Start/End: Original strand, 38290772 - 38290893
Alignment:
Q  68 tcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggatttt-atacagttcggattataaaattcgaactacataagac 166  Q
    ||||| ||| ||||||||||   ||| |||||||| |||||||| |||||||||||| |||| || ||||| ||||| ||||||  |||||||||| | |    
T  38290772 tcctactcggattctaaaattagaaagatttcaacatgtttttggaggttttatggggtttttattcagtttggattctaaaatctgaactacatagggc 38290871  T
Q  167 gcgtgagaaactcatagggtgg 188  Q
    | ||||||| ||||||||||||    
T  38290872 gtgtgagaagctcatagggtgg 38290893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 8217101 - 8217179
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttga 112  Q
    |||||||||||| || |||| ||| |||||||||| ||||||| ||||||||||||| |||| ||| |||||||||||||    
T  8217101 tcattacttttccca-cctacgagtttctcgcgcgccctattcaaattctaaaatctgaaatgttttaacgtgtttttga 8217179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 36183320 - 36183410
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggg 124  Q
    ||||| ||||||||||||||||| |||||| ||| | |||||| |||||||||||  |||| ||||||| | |||| || | |||||||||    
T  36183320 cattagttttctcatcctatgagtttctcgtgcgccatattcggattctaaaatccgaaatgtttcaacatattttggaggtttttatggg 36183410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 17223063 - 17223148
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    ||||||||||| || |  ||||| ||||| |||| | ||||   |||||||||||| ||||||||||||||||||||| |||||||    
T  17223063 cattacttttcccacctgatgagtttctcacgcgccttatttagattctaaaatctgaaatatttcaacgtgtttttgcaggtttt 17223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 7765314 - 7765206
Alignment:
Q  45 tcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggat-tttatacagttcggatt 143  Q
    |||||||||||| || | | ||||| ||||| |||| |||||||  ||||||||||||||||||||||   |||||| | || |||||||||||| ||||    
T  7765314 tcatcctatgagttttttgtgcgtcttattcaaattttaaaatccgaaatatttcaacgtgtttttgatatttttattgaatgtttatacagttcagatt 7765215  T
Q  144 ataaaattc 152  Q
     || |||||    
T  7765214 ctataattc 7765206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 33043864 - 33043951
Alignment:
Q  36 ttacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgg 123  Q
    ||||||||  ||||||||||| |||| || |  ||||||  ||||||||||||| |||||||| ||||||||||  ||| ||||||||    
T  33043864 ttactttttccatcctatgagtttcttgcacaccctatttaaattctaaaatctgaaatattttaacgtgttttaaaagattttatgg 33043951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 40491706 - 40491756
Alignment:
Q  69 cctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    |||||| | ||||||||||| ||||| |||||||||||||||| |||||||    
T  40491706 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttt 40491756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 35631301 - 35631224
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgttttt 110  Q
    |||||||||||| || |||||||| ||||||  || | ||||   |||||||||||| |||||||| |||||||||||    
T  35631301 tcattacttttcccaccctatgagtttctcggacgccgtatttctattctaaaatctgaaatatttaaacgtgttttt 35631224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 30124541 - 30124585
Alignment:
Q  78 attctaaaatctaaaatatttcaacgtgtttttgaaggttttatg 122  Q
    |||||||||| ||||||| ||||||||||||||  ||||||||||    
T  30124541 attctaaaatttaaaatagttcaacgtgtttttagaggttttatg 30124585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 40256803 - 40256933
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg-ggattttat 131  Q
    |||||| |||||||| |||||||| || ||||||| | |||||| ||| |||||||| ||||||| ||||||||||||| |||||||||| || ||||||    
T  40256803 tcattatttttctcaccctatgagtttttcgcgcgccttattcggattttaaaatctgaaatattgcaacgtgtttttggaggttttatgtggtttttat 40256902  T
Q  132 acagttcggattataaaattcgaactacata 162  Q
    ||  || ||||||||||||||||||||||||    
T  40256903 actttttggattataaaattcgaactacata 40256933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 2391580 - 2391743
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat-gggattttata 132  Q
    |||||||||| |||||||||||| ||||||||||  ||||| | |||||||||||  |||||||||||| | ||||| ||||| || | ||| ||||||     
T  2391580 cattacttttttcatcctatgagtttctcgcgcgcactatttggattctaaaatccgaaatatttcaacatattttttaaggtcttgtggggtttttatg 2391679  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaa 196  Q
    |||||  |||| ||||||| ||||| ||||||||| ||||||| |||||||| ||| |||||||    
T  2391680 cagtttagattctaaaatttgaactgcataagacgggtgagaacctcataggatgggaaaagaa 2391743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 44453594 - 44453743
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgg-gattttata 132  Q
    |||||||||| ||| ||||| || ||||||  ||||||||||| ||||||||||   ||||||||||||||||||||| | ||||||||| |  ||||||    
T  44453594 cattacttttttcaccctataagtttctcgtacgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaagttttatggagtctttata 44453693  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcata 182  Q
    ||||||||||| |||||| ||||||  |||   |||||||||||||||||    
T  44453694 cagttcggattctaaaatgcgaactgtatagagcgcgtgagaaactcata 44453743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 35356483 - 35356357
Alignment:
Q  36 ttacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggattttatacag 135  Q
    |||||||||||||||| |||| |||||| |||||||||| |||||||||||||  |||| ||| |||||||||| || | ||||||||| |||||    |    
T  35356483 ttacttttctcatcctttgagtttctcgtgcgtcctatttgaattctaaaatccgaaatgttttaacgtgttttggaggtttttatggggttttacgtcg 35356384  T
Q  136 ttcggattataaaattcgaactacata 162  Q
    ||||||||||| ||| |||||| ||||    
T  35356383 ttcggattatataatccgaactgcata 35356357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 3255227 - 3255078
Alignment:
Q  50 ctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaagg-ttttatgggat-tttatacagttcggattataa 147  Q
    ||||||| ||||||||||  ||||||| ||||||||||||||||||||||||  | |||||||||| ||||||||| | ||||| | |||| |||||||     
T  3255227 ctatgagtttctcgcgcgctctattcggattctaaaatctaaaatatttcaatatatttttgaaggtttttatggggtgtttatgccgttctgattatat 3255128  T
Q  148 aattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaac 198  Q
    ||| |||||| ||||   | |  |||||||||||||||| |||||||||||    
T  3255127 aatccgaactgcatagagcacacgagaaactcatagggt-gaaaaagaaac 3255078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 17115876 - 17115964
Alignment:
Q  31 gatcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    |||||||||||||   |||||||||| ||  | ||||| ||||| | ||| |||||||||||||||||||||||||||||||| |||||    
T  17115876 gatcattactttttctatcctatgagttttcctcgcgttctatttggattttaaaatctaaaatatttcaacgtgtttttgaaagtttt 17115964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 22713535 - 22713451
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    ||||||||||  || | |||||| |||||| ||| |||||| ||||| |||||||| ||||||||||||||||||||| |||||||    
T  22713535 cattactttttccaccttatgagtttctcgtgcg-cctatttgaattttaaaatctgaaatatttcaacgtgtttttggaggtttt 22713451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 35424983 - 35424848
Alignment:
Q  48 tcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggat-tttatacagttcggattata 146  Q
    ||||||||| |||||| ||| |||| |||||||||||||||| |||||||| ||| | |||| || | ||||||| ||| ||||| | |||| |||| ||    
T  35424983 tcctatgagtttctcgtgcgccctaatcgaattctaaaatctgaaatattttaacatattttggaggtttttatgcgatgtttatgccgttcagattcta 35424884  T
Q  147 aaattcgaactacataagacgcgtgagaaactcata 182  Q
     ||| | ||||||||| |||||  |||||| |||||    
T  35424883 taatccaaactacataggacgcacgagaaattcata 35424848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 12426990 - 12427051
Alignment:
Q  69 cctattcgaattctaaaatctaaaatatttcaacg-tgtttttgaaggttttatgggatttt 129  Q
    ||||||||||||||||||||| |||| |||||||| |||||||| ||| |||||||| ||||    
T  12426990 cctattcgaattctaaaatctgaaatgtttcaacgttgtttttggaggatttatgggttttt 12427051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 26971398 - 26971337
Alignment:
Q  126 ttttatacagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtg 187  Q
    |||||| ||||||||||| ||||||  ||||| |||| ||| ||||||||||||||||||||    
T  26971398 ttttatgcagttcggattttaaaatctgaactgcataggacacgtgagaaactcatagggtg 26971337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 22923164 - 22923104
Alignment:
Q  69 cctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggatttt 129  Q
    ||||||| |||||| ||||||||||| |||||||| |||||||||  ||||||| ||||||    
T  22923164 cctattcaaattcttaaatctaaaatctttcaacgcgtttttgaaaattttatgagatttt 22923104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 40379491 - 40379408
Alignment:
Q  91 aaatatttcaacgtgtttttgaaggttttatgggattttatacagttcggattataaaattcgaactacataagacgcgtgaga 174  Q
    |||||||||||||||||||| |||||||   ||| ||||||  |||| ||||| |||||| ||||||| ||| | |||||||||    
T  40379491 aaatatttcaacgtgtttttaaaggtttatagggtttttatgaagtttggattctaaaatccgaactatatagggcgcgtgaga 40379408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 22565338 - 22565281
Alignment:
Q  37 tacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaat 94  Q
    |||||||||||||| ||||| ||   ||||||| |||| |||||||||||||||||||    
T  22565338 tacttttctcatcccatgagttttctgcgcgtcttatttgaattctaaaatctaaaat 22565281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 23750461 - 23750421
Alignment:
Q  70 ctattcgaattctaaaatctaaaatatttcaacgtgttttt 110  Q
    |||||||||| |||||||| ||||||||||||||| |||||    
T  23750461 ctattcgaatgctaaaatccaaaatatttcaacgtattttt 23750421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 33513457 - 33513328
Alignment:
Q  69 cctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggattttatacagttcggattataaaattcgaactacataagacgc 168  Q
    |||||||| |||||||||||  ||||||||||||||||||| | |||||||||||| |||||   |||||||||| ||||||| |||||  ||| | |||    
T  33513457 cctattcggattctaaaatcctaaatatttcaacgtgttttcggaggttttatgggtttttacgtagttcggattttaaaatttgaactgtatagggcgc 33513358  T
Q  169 gtgagaaactcatagggtggaaaaagaaac 198  Q
    ||||||| ||||||||||| ||||||||||    
T  33513357 gtgagaacctcatagggtgaaaaaagaaac 33513328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 51 - 198
Target Start/End: Original strand, 25123235 - 25123383
Alignment:
Q  51 tatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat-gggattttatacagttcggattataaaa 149  Q
    |||||| || ||||||| |||||||  ||||||||||| ||||||||| |||| ||||||| ||||||||| ||| |||||| || |||||||| |||||    
T  25123235 tatgagtttttcgcgcgccctattcagattctaaaatccaaaatattttaacgcgtttttggaggttttatagggtttttatgcacttcggattctaaaa 25123334  T
Q  150 ttcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaac 198  Q
    | ||| || ||||||||| ||||||||| |||||||||  |||||||||    
T  25123335 tccgatctgcataagacgagtgagaaacacatagggtgagaaaagaaac 25123383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 36692988 - 36692838
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg-ggattttat 131  Q
    ||||||||||||||||| |||||| ||||||||||  ||||| || ||||||||||| ||||||||||| || ||||||||| ||||| | || ||||||    
T  36692988 tcattacttttctcatcatatgagcttctcgcgcgctctatttgagttctaaaatctgaaatatttcaatgtatttttgaagtttttacgaggtttttat 36692889  T
Q  132 acagttcggattataaaattcgaactacataagacgcgtgagaaactcatag 183  Q
     ||||| ||||| ||||| || |||| |||| ||| ||||||||||| ||||    
T  36692888 gcagtttggattctaaaa-tccaactgcataggacacgtgagaaacttatag 36692838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 36679371 - 36679223
Alignment:
Q  35 attacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg-ggattttatac 133  Q
    ||||||||||||||| |||||| ||||||||||  ||||| || ||||||||||| ||||||||||| || ||||||||| ||||| | || |||||| |    
T  36679371 attacttttctcatcatatgagcttctcgcgcgctctatttgagttctaaaatctgaaatatttcaatgtttttttgaagtttttacgaggtttttatgc 36679272  T
Q  134 agttcggattataaaattcgaactacataagacgcgtgagaaactcatag 183  Q
    |||| ||||| ||||| || |||| |||| ||| ||||||||||| ||||    
T  36679271 agtttggattctaaaa-tccaactgcataggacacgtgagaaacttatag 36679223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 196
Target Start/End: Complemental strand, 26665585 - 26665427
Alignment:
Q  40 ttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttt-tgaaggttttatgggat-tttatacagtt 137  Q
    ||||| ||||||||||| ||||||||||||||||| | ||| |||||||  |||||||||||| ||||||  |||  ||||||||| | ||||| | |||    
T  26665585 ttttcccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaacatgttttccgaaatttttatgggttgtttatgccgtt 26665486  T
Q  138 cggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaa 196  Q
    |||||| || ||||| |||| |||| | |||| |||||||||||| ||||| |||||||    
T  26665485 cggattctataattcaaactgcatagggcgcgcgagaaactcatatggtgggaaaagaa 26665427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 51203325 - 51203161
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttca-acgtgtttttgaaggttttatgggattttata 132  Q
    |||| ||||||||| | |||||| |||||||||  ||||||||||||||||| ||| |||||||||| |  | |||||| || |||||||||  |||||     
T  51203325 cattgcttttctcaccatatgagtttctcgcgcaccctattcgaattctaaagtctgaaatatttcagatttttttttggagattttatgggtatttatg 51203226  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaa 197  Q
      ||||||||| || |||||||||| |||| | |||  |||||||| ||||| ||||||||||||    
T  51203225 ttgttcggattctataattcgaactgcatatggcgcacgagaaactgataggatggaaaaagaaa 51203161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 23771673 - 23771835
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaac--gtgtttttgaaggttttatgggatttta 130  Q
    |||||||||||| || |||||||| || |||||||  ||||| | |||||||||||| ||||||||||||  || |||||| |||||||||||  |||||    
T  23771673 tcattacttttcgcaccctatgagcttatcgcgcgctctatttggattctaaaatcttaaatatttcaacatgtttttttggaggttttatggagtttta 23771772  T
Q  131 tacagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaa 193  Q
    | ||||||| ||| |||||||| || | ||||   | |||||||||||| || ||||| ||||    
T  23771773 tgcagttcgaattctaaaattcaaattgcatagagcacgtgagaaactcgtatggtgggaaaa 23771835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 15462067 - 15462182
Alignment:
Q  82 taaaatctaaaatatttcaacgtgtttttgaaggttttatgggat-tttatacagttcggattataaaattcgaactacataagacgcgtgagaaactca 180  Q
    |||||||| |||||||| |||||||||| || | ||||||||| | ||||| | ||| ||||| || |||||||||| ||||||  ||| ||||||||||    
T  15462067 taaaatctgaaatatttaaacgtgttttagaggtttttatggggtgtttatgccgtttggattctataattcgaactgcataaggagcgcgagaaactca 15462166  T
Q  181 tagggtggaaaaagaa 196  Q
    |||| |||||||||||    
T  15462167 taggttggaaaaagaa 15462182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 51715008 - 51715097
Alignment:
Q  35 attacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggg 124  Q
    ||||||||||||||| || ||| |||||||||| || ||||| |||||||||||| |||| ||| |||||||||| || | |||||||||    
T  51715008 attacttttctcatcatacgagtttctcgcgcgcccgattcggattctaaaatctgaaatgttttaacgtgttttggaggtttttatggg 51715097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 30670957 - 30670794
Alignment:
Q  35 attacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat--gggattttata 132  Q
    |||||||||||||| ||||||| ||||||||| || |||||| |||||||||||| |||| ||| || |||||||  ||  ||||||  |||  |||||     
T  30670957 attacttttctcatactatgagtttctcgcgcatcttattcggattctaaaatctgaaatgttttaatgtgttttgaaaatttttataggggtgtttatg 30670858  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaa 196  Q
    | ||||| ||| || ||||  ||||||||| ||||| |||||||   ||| |||||||||||||    
T  30670857 ctgttcgaattctataatttaaactacataggacgcatgagaaatcaatatggtggaaaaagaa 30670794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 43726563 - 43726727
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggat-tttat 131  Q
    |||||||||||  || | |||||| |||||||||| |||||| ||||| |||||||  |||||||| | | |||||| || | ||| ||| | | |||||    
T  43726563 tcattactttttccaccttatgagtttctcgcgcgccctattagaattttaaaatcagaaatattttatcatgttttagaggttttgatgaggtgtttat 43726662  T
Q  132 acagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaa 196  Q
    | |||||| |||||| ||| ||||||||||||||  ||||| |||   |||||||||||||||||    
T  43726663 atagttcgaattatataatccgaactacataagatacgtgataaatcaatagggtggaaaaagaa 43726727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 43751786 - 43751841
Alignment:
Q  65 gcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttta 120  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  43751786 gcgtactattcggattctaaaatctaaaatattttaacgtgtttttgaagatttta 43751841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 1750080 - 1750147
Alignment:
Q  51 tatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttt 118  Q
    |||||| |||||| |||||||||| | ||||||||||||||||| |||||||||| ||| | ||||||    
T  1750080 tatgagtttctcgtgcgtcctatttggattctaaaatctaaaatgtttcaacgtgatttaggaggttt 1750147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 7925339 - 7925426
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat 121  Q
    ||||||||||  || |||||||  ||||| || ||||||||   |||||||||||| |||||||||||||| ||||| ||||||||||    
T  7925339 cattactttttccaccctatgaatttctcacgtgtcctatttagattctaaaatctgaaatatttcaacgtattttttaaggttttat 7925426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 25838064 - 25838145
Alignment:
Q  40 ttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat 121  Q
    |||| ||||||||| |  || ||| |||||||||||  ||||||||||| ||||||||||||| ||||||||| | ||||||    
T  25838064 ttttttcatcctataaatttttcgtgcgtcctattcagattctaaaatccaaaatatttcaacatgtttttgaggtttttat 25838145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 42088017 - 42088082
Alignment:
Q  36 ttacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaa 101  Q
    ||||||||||||  ||||||| || ||| |||||||||||  ||| ||||||||||||||||||||    
T  42088017 ttacttttctcactctatgagtttttcgtgcgtcctattctgattttaaaatctaaaatatttcaa 42088082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 31188087 - 31188036
Alignment:
Q  71 tattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg 122  Q
    |||||| |||||| |||||||||||||||||| | ||||||||| |||||||    
T  31188087 tattcggattctataatctaaaatatttcaacctatttttgaagtttttatg 31188036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 43394636 - 43394675
Alignment:
Q  35 attacttttctcatcctatgagattctcgcgcgtcctatt 74  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  43394636 attacttttctcatcctatgagattcccgcgcgccctatt 43394675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 44053382 - 44053501
Alignment:
Q  58 ttctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggat-tttatacagttcggattataaaattcgaac 156  Q
    ||||||| ||||||| ||| ||| ||||||| ||||||||| |||||| ||| || | ||||||||||| ||||| | |||||| ||||| ||| | |||    
T  44053382 ttctcgcacgtcctaatcggattataaaatccaaaatattttaacgtgctttggaggtttttatgggatatttatgccgttcgggttatataatccaaac 44053481  T
Q  157 tacataagacgcgtgagaaa 176  Q
    || ||| | |||| ||||||    
T  44053482 tatatagggcgcgcgagaaa 44053501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 18395498 - 18395583
Alignment:
Q  35 attacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttat 121  Q
    |||| ||||| ||||||||||| || ||||||| |||||| | ||||| |||||  ||||||||||| |||||| || |||||||||    
T  18395498 attatttttcccatcctatgagttt-tcgcgcgccctatttgtattctgaaatccgaaatatttcaatgtgtttgtggaggttttat 18395583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 22460734 - 22460668
Alignment:
Q  134 agttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaacgg 200  Q
    ||||| |||| ||||||| |||||  |||| |||||||||||| | ||||| |||||||||||||||    
T  22460734 agttcagattctaaaatttgaactgtataaaacgcgtgagaaattaataggatggaaaaagaaacgg 22460668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 32998773 - 32998829
Alignment:
Q  63 gcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    ||||| |||||| ||||| ||| ||| |||||||||||| |||||||||||| ||||    
T  32998773 gcgcgccctatttgaattttaagatccaaaatatttcaatgtgtttttgaagatttt 32998829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 7229128 - 7229010
Alignment:
Q  76 gaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggga-ttttatacagttcggattataaaattcgaactacataagacgcgtgaga 174  Q
    |||||||||||| | |||||||||||| |||||||||| ||||||||||| |||||| |||||  |||| ||||||||||||| ||||||   | |||||    
T  7229128 gaattctaaaatttgaaatatttcaacatgtttttgaatgttttatgggatttttatgcagtttagattctaaaattcgaactgcataaggtacttgaga 7229029  T
Q  175 aactcatagggtggaaaaa 193  Q
    |||||||| ||||||||||    
T  7229028 aactcataaggtggaaaaa 7229010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 37507535 - 37507623
Alignment:
Q  36 ttacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggg 124  Q
    ||||||||| || |||||||| |||| ||||| ||||||||||||||||||||  |||| |||||||||||||| || | |||||||||    
T  37507535 ttacttttcccaccctatgagtttcttgcgcgccctattcgaattctaaaatccgaaatgtttcaacgtgttttggaggtttttatggg 37507623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 198
Target Start/End: Complemental strand, 9045765 - 9045632
Alignment:
Q  66 cgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgg-gattttatacagttcggattataaaattcgaactacataag 164  Q
    ||||||||||  |||  ||||||| ||||||||||||||||||||| ||||||||||| | |||||| |||| || ||| |||||||| || |  ||| |    
T  9045765 cgtcctattcagatttaaaaatctgaaatatttcaacgtgtttttggaggttttatggagtttttatgcagtccgaattttaaaattcaaattgtatagg 9045666  T
Q  165 acgcgtgagaaactcatagggtggaaaaagaaac 198  Q
    | |||||| ||||| ||||| | |||||||||||    
T  9045665 atgcgtgacaaacttataggatagaaaaagaaac 9045632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 27157788 - 27157623
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggat-tttata 132  Q
    ||||||||||  || |||||||| |||||| |||| ||||||| |||||||||||  || |||||||||||| ||||| || ||||||||| | |||||     
T  27157788 cattactttttccaccctatgagtttctcgtgcgtgctattcggattctaaaatccgaattatttcaacgtggttttggagattttatggggtatttatg 27157689  T
Q  133 cagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaac 198  Q
    |  |||||||| || ||| |||| | |||| | |||  || ||||| ||||||||| |||||||||    
T  27157688 ccattcggattctataatccgaaatgcatagggcgcacgataaactgatagggtgggaaaagaaac 27157623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 7685450 - 7685589
Alignment:
Q  58 ttctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgg-gattttatacagttcggattataaaattcgaac 156  Q
    ||||||| | |||||||  |||| |||||||| ||||||||||||||  ||||||| ||||||||| | |||||| | ||||||||||||||||  ||||    
T  7685450 ttctcgcacatcctatttaaattttaaaatctgaaatatttcaacgt-attttgaaagttttatggagtttttatgcggttcggattataaaatctgaac 7685548  T
Q  157 tacataagacgcgtgagaaactcatagggtggaaaaagaaa 197  Q
    | ||||   |||||||||| ||||||||  | |||||||||    
T  7685549 tgcatagagcgcgtgagaagctcataggacgaaaaaagaaa 7685589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 34098414 - 34098497
Alignment:
Q  69 cctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggattttatacagttcggattataaaattc 152  Q
    |||||||| ||||||||||| ||||||||| ||| | |||||| |||||||  | | |||||| ||||||||||||||||||||    
T  34098414 cctattcgcattctaaaatccaaaatattttaacatatttttgtaggtttttggagtttttatgcagttcggattataaaattc 34098497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 6030123 - 6029985
Alignment:
Q  63 gcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggga-ttttatacagttcggattataaaattcgaactacat 161  Q
    |||||||||||| ||||| ||||| | |||||||||||||||||||||| | ||||||||  | |||||| |||||| |||| |||||||  |||| |||    
T  6030123 gcgcgtcctatttgaattttaaaagccaaaatatttcaacgtgtttttggaagttttatgaaatttttatgcagttcagattctaaaatttcaactgcat 6030024  T
Q  162 aagacgcgtgagaaactcatagggtggaaaaagaaacgg 200  Q
    | | | || ||||| ||||||  |||  |||||||||||    
T  6030023 agggcacgcgagaacctcataacgtgagaaaagaaacgg 6029985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 39039700 - 39039829
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggg-attttata 132  Q
    ||||| |||| ||||||||| || |||| ||||||||||||   |||||||||||  ||| ||||||||||||||||  | |||||||||| |||||||     
T  39039700 cattatttttttcatcctataagcttcttgcgcgtcctatttagattctaaaatccgaaacatttcaacgtgtttttagaagttttatgggaattttatg 39039799  T
Q  133 cagttcggattataaaattcgaactacata 162  Q
    || ||| |||| || ||| | |||||||||    
T  39039800 caattcagattttagaatccaaactacata 39039829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 3103786 - 3103825
Alignment:
Q  82 taaaatctaaaatatttcaacgtgtttttgaaggttttat 121  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  3103786 taaaatctaaaatatttcaacgtgtttttgaagattttat 3103825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 7632648 - 7632735
Alignment:
Q  32 atcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    ||||||| ||||||||||||||||| ||| |  ||  | ||||| |||| |||||| | |||||||||||||| ||||||||||||||    
T  7632648 atcattatttttctcatcctatgagtttcacatgcaccttattcaaattttaaaatttgaaatatttcaacgtatttttgaaggtttt 7632735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 44173166 - 44173231
Alignment:
Q  57 attctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg 122  Q
    ||||||||||| |||||||  |||||||||||  |||||||||||||| |||||| || |||||||    
T  44173166 attctcgcgcgccctattcagattctaaaatcagaaatatttcaacgtatttttggagattttatg 44173231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 40899651 - 40899706
Alignment:
Q  64 cgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    |||| |||||||  ||| |||||||| |||||||| ||||||||||||||||||||    
T  40899651 cgcgccctattcagattttaaaatctgaaatattttaacgtgtttttgaaggtttt 40899706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 39555878 - 39555932
Alignment:
Q  58 ttctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttga 112  Q
    |||||||||||||| |||  ||| |||||||| |||| |||||||||||||||||    
T  39555878 ttctcgcgcgtcctgttcagattttaaaatctgaaatgtttcaacgtgtttttga 39555932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 42183714 - 42183784
Alignment:
Q  93 atatttcaacgtgtttttgaaggttttatgg-gattttatacagttcggattataaaattcgaactacata 162  Q
    |||||||||||||||||||||  ||||||||   ||||||  |||||||||| ||||||||||||| ||||    
T  42183714 atatttcaacgtgtttttgaaaattttatggattttttatggagttcggattctaaaattcgaactgcata 42183784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 9748404 - 9748327
Alignment:
Q  35 attacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttga 112  Q
    |||||||||  || |||||||| ||||| || | |||||||| ||||||||||| |||| | || |||||||||||||    
T  9748404 attactttttccaccctatgagcttctcccgtgccctattcggattctaaaatccaaaaaaatttaacgtgtttttga 9748327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 34677281 - 34677205
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttt 109  Q
    ||||||||||||||| | |||||| |||||  ||| ||||||  |||| ||||||  || |||||||||||||||||    
T  34677281 tcattacttttctcaccttatgagcttctcttgcgccctatttcaattttaaaatacaatatatttcaacgtgtttt 34677205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 40506615 - 40506695
Alignment:
Q  39 cttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt 119  Q
    ||||| |||||||||||| ||||||   | |||||| | ||| |||||||  ||||||||||||||| ||||| |||||||    
T  40506615 cttttttcatcctatgagtttctcgtatgccctatttggattgtaaaatccgaaatatttcaacgtgattttggaggtttt 40506695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 7257406 - 7257295
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg-ggattttat 131  Q
    |||||||||||  || |||||||| |||||||  | |||||||| ||||||||||| || |||||||||| |||||||| |||||||||| |||||||||    
T  7257406 tcattactttttccaccctatgaggttctcgcatgccctattcgtattctaaaatccaagatatttcaacatgtttttggaggttttatgaggattttat 7257307  T
Q  132 acagttcggatt 143  Q
     |||||||||||    
T  7257306 gcagttcggatt 7257295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 9603965 - 9603870
Alignment:
Q  34 cattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggatttt 129  Q
    ||||| ||||| || |||||||  |||||||||||||||||| ||||||||||||| |||||||| ||||| |||||| |||||||||||| ||||    
T  9603965 cattatttttcccaccctatgaccttctcgcgcgtcctattcaaattctaaaatctgaaatattttaacgtatttttggaggttttatggggtttt 9603870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 782453 - 782326
Alignment:
Q  71 tattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg-ggattttatacagttcggattataaaattcgaactacataagacgcg 169  Q
    |||||| |||||||||||  |||||||||||| | |||||| || ||||||| || |||||| ||||||||||| ||||||||||||| |||||| || |    
T  782453 tattcggattctaaaatccgaaatatttcaacttttttttggagattttatgaggtttttatgcagttcggattctaaaattcgaactgcataaggcgtg 782354  T
Q  170 tgagaaactcatagggtggaaaaagaaa 197  Q
    |||||| ||| | |||||  ||||||||    
T  782353 tgagaagctcgttgggtgataaaagaaa 782326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 39791202 - 39791272
Alignment:
Q  39 cttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttt 109  Q
    ||||||||| ||||| || |||||  |||||||||| |||||||||||||  |||||||||||||||||||    
T  39791202 cttttctcaccctataagtttctcatgcgtcctatttgaattctaaaatccgaaatatttcaacgtgtttt 39791272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 3664229 - 3664281
Alignment:
Q  77 aattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggatttt 129  Q
    ||||||||||||  |||||||| |||||||||||| |||||||||| ||||||    
T  3664229 aattctaaaatccgaaatattttaacgtgtttttgtaggttttatgagatttt 3664281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 27317145 - 27317073
Alignment:
Q  126 ttttatacagttcggattataaaattcgaactacataagacgcgtgagaaactcatagggtggaaaaagaaac 198  Q
    ||||||| |||| ||||| |||||| | || | |||||| ||||||||||||||||||| || ||||||||||    
T  27317145 ttttatatagtttggattctaaaatccaaattgcataaggcgcgtgagaaactcataggatgtaaaaagaaac 27317073  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 41945312 - 41945198
Alignment:
Q  49 cctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggtttt-atgggattttatacagttcggattataa 147  Q
    |||||||  |||| ||||| |||||| |||||||||||||| |||| ||| ||| |||||| ||||||||| |||||  |||||   ||||||||||||     
T  41945312 cctatgactttcttgcgcgccctatttgaattctaaaatctgaaatgttttaacatgtttt-gaaggtttttatgggtgtttatgtcgttcggattatat 41945214  T
Q  148 aattcgaactacataa 163  Q
    ||| |||||| |||||    
T  41945213 aatccgaactgcataa 41945198  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 39927573 - 39927515
Alignment:
Q  64 cgcgtcctattcgaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg 122  Q
    |||| |||| ||| ||| |||||||  |||| |||||||||||||||||||||||||||    
T  39927573 cgcgccctactcggattttaaaatccgaaatgtttcaacgtgtttttgaaggttttatg 39927515  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 24083160 - 24083233
Alignment:
Q  33 tcattacttttctcatcctatgagattctcgcgcgtcctattcgaattctaaaatctaaaatatttcaacgtgt 106  Q
    ||||||||||||  ||||| |||| |||||||| | |||||| | |||||||||||  |||||||| |||||||    
T  24083160 tcattacttttcctatcctgtgagtttctcgcgtgccctatttggattctaaaatccgaaatattttaacgtgt 24083233  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 37211001 - 37211046
Alignment:
Q  30 tgatcattacttttctcatcctatgagattctcgcgcgtcctattc 75  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||||    
T  37211001 tgattattacttttttcatcctatgagtttctcacgcgtcctattc 37211046  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 55301229 - 55301109
Alignment:
Q  78 attctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggatttt-atacagttcggattataaaattcgaactacataagacgcgtgagaaa 176  Q
    ||||||||||| ||| |||||||||||||||||  || ||||||| |||||| || | ||||| ||| || |||  ||||  |||| |||  |||||||     
T  55301229 attctaaaatccaaa-tatttcaacgtgtttttagagattttatgagatttttatgccgttcgaattttagaatctgaaccgcataggacatgtgagaac 55301131  T
Q  177 ctcatagggtggaaaaagaaac 198  Q
    || |||||||||||||||||||    
T  55301130 ctaatagggtggaaaaagaaac 55301109  T

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Target: scaffold0071 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 125 - 10
Alignment:
Q  82 taaaatctaaaatatttcaacgtgtttttgaaggttttatgggat-tttatacagttcggattataaaattcgaactacataagacgcgtgagaaactca 180  Q
    |||||||| |||||||| |||||||||| || | ||||||||| | ||||| | ||| ||||| || |||||||||| ||||||  ||| ||||||||||    
T  125 taaaatctgaaatatttaaacgtgttttagaggtttttatggggtgtttatgccgtttggattctataattcgaactgcataaggagcgcgagaaactca 26  T
Q  181 tagggtggaaaaagaa 196  Q
    |||| |||||||||||    
T  25 taggttggaaaaagaa 10  T

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