View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310-Insertion-1 (Length: 179)
Name: NF1310-Insertion-1
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 6e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 24513631 - 24513506
Alignment:
| Q |
10 |
tagagacataaattgtgcaagaggtgcacaatattcattgaaacaacgcaaaaactacgagaaacattaagtgtagttagacaattaacaaagacattaa |
109 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||| |
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| T |
24513631 |
tagagacataaattttgcaagaggtgcacaatattcattgaaacaacgcaaaaactacgagaagcatcaagtgtagttagaccattaacaagaacattaa |
24513532 |
T |
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| Q |
110 |
tctaaactaaaaatatacaaaataac |
135 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24513531 |
tctaaactaaaaatatacaaaataac |
24513506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 24505644 - 24505531
Alignment:
| Q |
10 |
tagagacataaattgtgcaagaggtgcacaatattcattgaa-acaacgcaaaaactacgagaaacattaagtgtagttagacaattaacaaagacatta |
108 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||| || |||| ||| |||||| ||||| | || |||||||| ||||||||||||||||||| |
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| T |
24505644 |
tagagacataaattgtgcaagagttgcacgatattcattaaacacaatgcagaaactatgagaagcgatacatgtagttaaacaattaacaaagacatta |
24505545 |
T |
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| Q |
109 |
atctaaactaaaaa |
122 |
Q |
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|| |||| |||||| |
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| T |
24505544 |
atataaattaaaaa |
24505531 |
T |
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