View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310-Insertion-2 (Length: 544)

Name: NF1310-Insertion-2
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310-Insertion-2
NF1310-Insertion-2
[»] scaffold0050 (1 HSPs)
scaffold0050 (96-543)||(1954-2403)


Alignment Details
Target: scaffold0050 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 96 - 543
Target Start/End: Original strand, 1954 - 2403
Alignment:
Q  96 atcttggaatggaatgaaatcatcttcagctactgtgcatataaggattatgcagtttccctctctgccttgatcatcaagtttgctaaactgatatggt 195  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  1954 atcttggaatggaattaaatcatcttcagctactgtgcatataaggattatgcggtttccctctctgccttgatcatcaagtttcctaaactgatatggt 2053  T
Q  196 gttagctcgtaacttttctaattaacatcgaactttgtggtaacatgcaacttatattgttgttgattgataatagaaaagaaaagacttgaattggtgg 295  Q
    |||||||||||| ||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  2054 gttagctcgtaattttgctaactaacatccaactttgtggtaacatgcaacttacattgttgttgattgataatagaaaagaaaagactcgaattggtgg 2153  T
Q  296 catccaaaagagtttatatgttaattgaaattctttacaattttgactttaagggactagtcatacttgagcgaataataannnnnnnnnnnnnaactat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||             ||||||    
T  2154 catccaaaagagtttatatgttaattgaaattctttacaattttgattttaagggactagtcatacttgagagaataataa-ttttcattttctaactat 2252  T
Q  396 ttcaaatccactttaaggacgattcgtttgggagaacccgagttttaatcctgactcgaataactcttagctagacttcaatttcttctggccaaactcc 495  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  2253 ttcatatccactttaaggacgattcgttcgggagaacccgagttttaatcctgactcaaataaatcttagctagacttcaatttcttctggccgaactcc 2352  T
Q  496 gaattatcagggccccttcccta---aggtgaccagagttaaaatcaaaca 543  Q
     ||||||||||||| ||||||||   | |||||||||||||||||||||||    
T  2353 aaattatcagggcctcttccctacggaagtgaccagagttaaaatcaaaca 2403  T

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