View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310-Insertion-4 (Length: 861)

Name: NF1310-Insertion-4
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310-Insertion-4
NF1310-Insertion-4
[»] chr1 (3 HSPs)
chr1 (118-861)||(15593742-15594483)
chr1 (377-782)||(4679353-4679755)
chr1 (17-82)||(15593673-15593740)
[»] chr7 (10 HSPs)
chr7 (377-772)||(8586518-8586910)
chr7 (383-772)||(8615685-8616071)
chr7 (677-808)||(8666680-8666811)
chr7 (512-782)||(3146363-3146633)
chr7 (677-861)||(8653708-8653892)
chr7 (681-782)||(17259498-17259599)
chr7 (677-808)||(10495147-10495278)
chr7 (679-774)||(6788775-6788870)
chr7 (567-657)||(13334292-13334382)
chr7 (681-782)||(17267201-17267302)
[»] chr2 (3 HSPs)
chr2 (366-782)||(16662797-16663210)
chr2 (677-771)||(16658333-16658427)
chr2 (677-726)||(12246267-12246316)
[»] chr4 (2 HSPs)
chr4 (453-766)||(30774289-30774602)
chr4 (720-774)||(35131763-35131817)
[»] chr8 (3 HSPs)
chr8 (518-627)||(43743918-43744027)
chr8 (162-302)||(1767117-1767256)
chr8 (514-624)||(43445783-43445894)
[»] chr5 (1 HSPs)
chr5 (539-627)||(28219041-28219129)
[»] scaffold0248 (1 HSPs)
scaffold0248 (264-336)||(17757-17829)


Alignment Details
Target: chr1 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 118 - 861
Target Start/End: Original strand, 15593742 - 15594483
Alignment:
Q  118 tttgggagacaaggtgcaaagaaagctcaaataaaccnnnnnnngattattaactaaagcacaagagcctgatagggatcttaatttggaagcagtgttt 217  Q
    ||||| ||||||||| || ||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||| |||||||||||  ||||    
T  15593742 tttggaagacaaggtccatagaaagctcaaataaaccaaaaac-gattattaactaaagcacaagtgcctgatagggatcttgatttggaagcaaggttt 15593840  T
Q  218 -caaatatgctctactaaaactagaaaacaagacaaaacacacaaacaatttaagtaacatgttccatgcagatttcatcataaacatcaatacttttag 316  Q
     ||||||||||  |||||||||||||||||||||| || |||||||||||||||| |||||||| | |||| |||||||||||||||||||||||||| |    
T  15593841 tcaaatatgct--actaaaactagaaaacaagacagaaaacacaaacaatttaagcaacatgtttcgtgcaaatttcatcataaacatcaatactttttg 15593938  T
Q  317 ataatgataatcaacctaaatgtttgttatgctaaacaaagaagaatataactagtcagccttgactacaaggttttcgaacatgctctcgagctccttc 416  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  15593939 ataatgataatcaacctaaatgtttgttgtgctgaacaaagaagagtaaaactagccagtcttgactacaaggttttcgaacatgctctcgagctccttc 15594038  T
Q  417 agattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctt 516  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  15594039 aaattaccctcaagaacatctacttcattatgctggttattcttcttatcaagcaaatttgtagccactgtaattgcaccattgatctttgtaacttctt 15594138  T
Q  517 tagaagagagttttaatttgacatccttatttttcagagcatttctcaacttgtaaacacagtcatctaatgcgttcattacctccgccttccttaggaa 616  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15594139 tagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaa 15594238  T
Q  617 tttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnagtttcatatgctgacaacctttctttgtcattggttattgtgatctcgttt 716  Q
    |||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594239 tttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgttt 15594338  T
Q  717 gtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagcatctttcaaaggtctggccacggggacccgaagtgc 816  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15594339 gtattgccagtggatgtttccttcacagaaacagtcaggatagcattttcatcgatagcaaagcatccttcaaaggtctggccacggggacccgaagtgc 15594438  T
Q  817 aagaaagagtcaacataccaagaaaattattgtcactagctcttg 861  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  15594439 aagaaagagtcaacataccaagcaaattattgtcactagctcttg 15594483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 377 - 782
Target Start/End: Complemental strand, 4679755 - 4679353
Alignment:
Q  377 cttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaattt 476  Q
    ||||||| |||| ||||| ||||||||||| | ||||||||||| | ||||||||||||||| ||| ||   ||| |  || |||||||||||||| ||     
T  4679755 cttgacttcaagcttttccaacatgctctccaactccttcagatgatcctcaagaacatctatttcttt---ctgttcgttattcttatcaagcaagttg 4679659  T
Q  477 gcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttatttttcagagcatttctcaacttgtaaacac 576  Q
    |  ||||||||||||||| | || ||||||  |  ||| | | ||||||| ||||| || |||||||| || || | ||||||  | |  ||||||||||    
T  4679658 gtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacac 4679559  T
Q  577 agtcatctaatgcgttcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnagtttcatatgc 676  Q
    |    || |||||  |||||||||  ||||||||||  ||||||| ||||||  | ||||||| ||| ||||||| |||||       |  || | |||     
T  4679558 aaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaatcagttttttaacttgaaatgt 4679459  T
Q  677 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca 776  Q
    || |||||||||||| ||||||||||| ||||||| ||| ||||| || || ||  |||| ||  |||||||||| | | | |||||| |||| ||||||    
T  4679458 tgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagca 4679359  T
Q  777 aagcat 782  Q
    ||||||    
T  4679358 aagcat 4679353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 15593673 - 15593740
Alignment:
Q  17 ttcaagttcaagctt-atagagcaaaaccagtcctgttacat-gtactctattcaaaagttcatcatg 82  Q
    |||| |||||||||| ||||| ||||||||||||| |||||| ||||| |||||||||||||||||||    
T  15593673 ttcacgttcaagctttatagatcaaaaccagtcctattacatagtactgtattcaaaagttcatcatg 15593740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 1e-68; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 377 - 772
Target Start/End: Complemental strand, 8586910 - 8586518
Alignment:
Q  377 cttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaattt 476  Q
    |||||| | ||||| ||| ||||||||||| ||||||||||||| | || ||||||||||||  ||||| | ||||| ||||||   |||||||||||||    
T  8586910 cttgaccaaaaggtcttccaacatgctctcaagctccttcagatgatccacaagaacatctatgtcattctcctggttattctt---atcaagcaaattt 8586814  T
Q  477 gcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttatttttcagagcatttctcaacttgtaaacac 576  Q
    | ||||| ||||||||||  ||| |||||| |||||| || |||||||   |||| ||| | ||||||||| || |||||||| || |||||||||||||    
T  8586813 gtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaacttgtaaacac 8586714  T
Q  577 agtcatctaatgcgttcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnagtttcatatgc 676  Q
    | ||||||||||  ||||||||||  ||||||||||||||||||| ||| |||||  | ||  |||| |||||||||||||       | ||||||  ||    
T  8586713 aatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcagcgaggtacacctctgcttcttgaatcagtcttttaatttcatcagc 8586614  T
Q  677 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgat 772  Q
     || ||||||||||||||||||||||| || || |||||||||||||||| |||| |||||||| |||||||||| | ||||||||||||||||||    
T  8586613 cgataacctttctttgtcattggttatcgttatttcgtttgtattgccagaggatatttccttcgcagaaacagttaggataccattttcatcgat 8586518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 383 - 772
Target Start/End: Original strand, 8615685 - 8616071
Alignment:
Q  383 tacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaatttgcagcc 482  Q
    |||||||| ||| ||||| || | |||||||||||||| | | || ||||| ||||||||| | ||||||| |||| |   |||||||||||||| ||||    
T  8615685 tacaaggtcttccaacatacttttgagctccttcagatgatcttcgagaacttctacttcactctgctggttattcct---atcaagcaaatttgtagcc 8615781  T
Q  483 actgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttatttttcagagcatttctcaacttgtaaacacagtcat 582  Q
    || |||||||||   || || |||  ||||| || ||| || || |||||    ||||||||||| || |||||||| |||||||||||||  |||||||    
T  8615782 acagtaattgcattgttgatattttcaactttttgagatgatagctttaaagcaacatccttattctttagagcattcctcaacttgtaaatgcagtcat 8615881  T
Q  583 ctaatgcgttcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnagtttcatatgctgacaa 682  Q
    ||||| | ||||||||||  ||||||||||||||||| ||||||||||| || || ||||| |||||||||||||       | ||||||  || || ||    
T  8615882 ctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatcagccgataa 8615981  T
Q  683 cctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgat 772  Q
    ||||||||||||||||||||| || || || |||||||||||||| ||| |||||||| |||| ||||| | ||||||||| || |||||    
T  8615982 cctttctttgtcattggttatcgttatttcatttgtattgccagtagatttttccttcgcagatacagtaaggataccattatcgtcgat 8616071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 677 - 808
Target Start/End: Original strand, 8666680 - 8666811
Alignment:
Q  677 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca 776  Q
    ||||||||||||||||||||||||||| ||||||  |||  ||||||| |||||| ||||| |  ||| |||||||| ||||||||||||||| || | |    
T  8666680 tgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcaggataccattttcatcaattgaa 8666779  T
Q  777 aagcatctttcaaaggtctggccacggggacc 808  Q
    ||||||   || |||| |||||||||||||||    
T  8666780 aagcatacctccaagggctggccacggggacc 8666811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 512 - 782
Target Start/End: Original strand, 3146363 - 3146633
Alignment:
Q  512 ttctttagaagagagttttaatttgacatccttatttttcagagcatttctcaacttgtaaacacagtcatctaatgcgttcattacctccgccttcctt 611  Q
    ||||| ||| ||||| ||||  || |||||||| || || | ||||||| ||| |||||||||||| | ||||||||| |||||||| |  |||||||||    
T  3146363 ttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctt 3146462  T
Q  612 aggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnagtttcatatgctgacaacctttctttgtcattggttattgtgatct 711  Q
    || ||||| ||||| ||| |||| || |  || |||||||  ||||       | |||| |  | |||||| |||||||||||||| |||| ||| ||||    
T  3146463 agaaatttttcatcctcaacacggtaattttcagcttctttgatcatttttataatttcttgggatgacaatctttctttgtcattagttactgtaatct 3146562  T
Q  712 cgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagcat 782  Q
    | || ||| | ||||||||| |||| ||  |||||||| | | ||| |||||||||| ||||| |||||||    
T  3146563 cattcgtactaccagtggatttttcattagcagaaacaattaagatgccattttcattgatagtaaagcat 3146633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 677 - 861
Target Start/End: Original strand, 8653708 - 8653892
Alignment:
Q  677 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca 776  Q
    ||||||||||||||| ||||| || || |||||||||||   | | |||||||   | |||||  |||||||||| | ||||||||||||||| || | |    
T  8653708 tgacaacctttctttctcattagtgatggtgatctcgttcagaattccagtggtgatatccttaccagaaacagttaagataccattttcatcaatggaa 8653807  T
Q  777 aagcatctttcaaaggtctggccacggggacccgaagtgcaagaaagagtcaacataccaagaaaattattgtcactagctcttg 861  Q
    ||||||   || |||| ||| ||||||||||| | |  ||||||||| || || | |||||| | ||||||||||||||||||||    
T  8653808 aagcatacctccaagggctgaccacggggacctggaaggcaagaaagtgtaaataaaccaagcagattattgtcactagctcttg 8653892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 782
Target Start/End: Original strand, 17259498 - 17259599
Alignment:
Q  681 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 780  Q
    |||||| ||||||||||||||||||| ||||| ||  || ||||||||||| | ||| |  ||||||| ||||  |||||||||| ||||||| ||||||    
T  17259498 aaccttcctttgtcattggttattgtaatctcattcttactgccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgatatcaaagc 17259597  T
Q  781 at 782  Q
    ||    
T  17259598 at 17259599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 677 - 808
Target Start/End: Complemental strand, 10495278 - 10495147
Alignment:
Q  677 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca 776  Q
    ||||||||||||||||||||| || || |||||| ||||  ||||||| || ||| | |||||  ||| |||||||| ||| ||||||||||| || | |    
T  10495278 tgacaacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggatgccattttcatcaatggaa 10495179  T
Q  777 aagcatctttcaaaggtctggccacggggacc 808  Q
    ||||||   || |||| ||||||||| |||||    
T  10495178 aagcatacctccaagggctggccacgaggacc 10495147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 774
Target Start/End: Original strand, 6788775 - 6788870
Alignment:
Q  679 acaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatag 774  Q
    ||||||||||||||| ||||||||| || ||||| ||  ||||||| |||||| ||||  |  ||||||| ||||  |||||||||||||| ||||    
T  6788775 acaacctttctttgtaattggttatggtaatctcattcatattgcccgtggatttttcagtagcagaaacggtcaaaataccattttcatcaatag 6788870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 567 - 657
Target Start/End: Complemental strand, 13334382 - 13334292
Alignment:
Q  567 ttgtaaacacagtcatctaatgcgttcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatca 657  Q
    |||||||||||   ||||||||| ||||||||||  |||||||||| |||||||| ||||||  || | |||||||  ||||||| |||||    
T  13334382 ttgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatca 13334292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 782
Target Start/End: Original strand, 17267201 - 17267302
Alignment:
Q  681 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 780  Q
    |||||| ||||||||||||||||||| ||||| ||  || | ||||||||| | ||| |  ||||||| ||||  |||||||||| ||||| | ||||||    
T  17267201 aaccttcctttgtcattggttattgtaatctcattcttactaccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgacatcaaagc 17267300  T
Q  781 at 782  Q
    ||    
T  17267301 at 17267302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 366 - 782
Target Start/End: Complemental strand, 16663210 - 16662797
Alignment:
Q  366 aactagtcagccttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttat 465  Q
    |||||| ||| ||||| ||||||||  || ||||| ||||| ||||||||||||| | ||||||||||||||||||||||   |||||   |||||| ||    
T  16663210 aactagacagtcttgattacaaggtgatccaacatactctcaagctccttcagatgatcctcaagaacatctacttcattcccctggt---tcttctcat 16663114  T
Q  466 caagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttatttttcagagcatttctcaa 565  Q
     |||||||| |  |||||| |||||||||  ||| |||||| ||  || ||   |||| || ||||||||||||| |||||| || |||||||| |||||    
T  16663113 gaagcaaatctttagccaccgtaattgcatgattgatctttttatttttttggaaagaaagctttaatttgacattcttattctttagagcattcctcaa 16663014  T
Q  566 cttgtaaacacagtcatctaatgcgttcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnna 665  Q
     |||||||  |||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| | || ||||  |||||||||||||       |    
T  16663013 tttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttca 16662914  T
Q  666 gtttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccatttt 765  Q
     ||||   |   || ||||||||||||||||||||||| |||||||| ||  || | || |||||| ||||||   | |||||||| | ||| || ||||    
T  16662913 atttcgactctggataacctttctttgtcattggttatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgtttt 16662814  T
Q  766 catcgatagcaaagcat 782  Q
    |||||||||||||||||    
T  16662813 catcgatagcaaagcat 16662797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 677 - 771
Target Start/End: Complemental strand, 16658427 - 16658333
Alignment:
Q  677 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcga 771  Q
    |||||| |||||||| ||||||||||| ||||||| ||||||||| || || |||  ||||||  |||||||||| | |||||||||||||||||    
T  16658427 tgacaatctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcagaaacagttaggataccattttcatcga 16658333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 726
Target Start/End: Complemental strand, 12246316 - 12246267
Alignment:
Q  677 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccag 726  Q
    ||||||||||||||||| ||| |||||||| ||||| |||| ||||||||    
T  12246316 tgacaacctttctttgtaattagttattgtaatctcatttgaattgccag 12246267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 453 - 766
Target Start/End: Original strand, 30774289 - 30774602
Alignment:
Q  453 tgattcttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttatttttca 552  Q
    ||||| ||||||||||||||||||| |||||||| ||||||| || | |||||| | | || || ||| || || ||||| || || |||||| | || |    
T  30774289 tgattattcttatcaagcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatcttta 30774388  T
Q  553 gagcatttctcaacttgtaaacacagtcatctaatgcgttcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttg 652  Q
    || |||| |||||||||||||  |||  ||||||||| |||||||||   | |||||||||||||||||||||||||||||| || ||    ||||||||    
T  30774389 gaccattcctcaacttgtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcatcttcagcacggtactctctagcttcttg 30774488  T
Q  653 aatcannnnnnnagtttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtc 752  Q
    |||||       | |||| | |   || |||||||||||||| |||||||| |||||||| ||  |||||||||||||| ||||| |  |||||||| ||    
T  30774489 aatcattttgttaatttcttctctggataacctttctttgtcgttggttatcgtgatctcattcatattgccagtggatttttccatagcagaaacattc 30774588  T
Q  753 atgataccattttc 766  Q
    |  |||||||||||    
T  30774589 agtataccattttc 30774602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 720 - 774
Target Start/End: Original strand, 35131763 - 35131817
Alignment:
Q  720 ttgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatag 774  Q
    ||||| |||||| |||||||  ||||||||||||  |||||||||||||||||||    
T  35131763 ttgccggtggatttttccttagcagaaacagtcaaaataccattttcatcgatag 35131817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 518 - 627
Target Start/End: Original strand, 43743918 - 43744027
Alignment:
Q  518 agaagagagttttaatttgacatccttatttttcagagcatttctcaacttgtaaacacagtcatctaatgcgttcattacctccgccttccttaggaat 617  Q
    |||||| || |||||||| ||||||||||| || | |||||| |||||||||||||| || ||||||||||| |||||||| |  || ||||| || |||    
T  43743918 agaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattacattggctttcctaagaaat 43744017  T
Q  618 ttctcatctt 627  Q
    ||||||||||    
T  43744018 ttctcatctt 43744027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 1767117 - 1767256
Alignment:
Q  162 gattattaactaaagcacaagagcctgatagggatcttaatttggaagcagtgttt-caaatatgctctactaaaactagaaaacaagacaaaacacaca 260  Q
    |||||||||||  ||||||||| ||  | ||||||||| || | ||||||  |||| |||||||| |  |||||||||| ||||||||| | || ||| |    
T  1767117 gattattaacttgagcacaagaaccataaagggatcttgatcttgaagcaaggttttcaaatatgtt--actaaaactaaaaaacaagaaagaaaacaga 1767214  T
Q  261 aacaatttaagtaacatgttccatgcagatttcatcataaac 302  Q
    ||||||||||||| ||||||| ||||| | || |||||||||    
T  1767215 aacaatttaagtagcatgttcaatgcaaacttgatcataaac 1767256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 624
Target Start/End: Original strand, 43445783 - 43445894
Alignment:
Q  514 ctttagaagagagttttaatttgacatccttatttttcagagcatttctcaacttgtaaa-cacagtcatctaatgcgttcattacctccgccttcctta 612  Q
    ||||||| ||||| |||||||| | ||||||||| || | | |||| |||||| |||||| | || ||||||||||| |||||||| |  |||||||| |    
T  43445783 ctttagacgagagctttaatttaatatccttattctttacaacattcctcaacctgtaaaacccattcatctaatgcattcattacattggccttcctaa 43445882  T
Q  613 ggaatttctcat 624  Q
    | ||||||||||    
T  43445883 gaaatttctcat 43445894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 539 - 627
Target Start/End: Original strand, 28219041 - 28219129
Alignment:
Q  539 atccttatttttcagagcatttctcaacttgtaaacacagtcatctaatgcgttcattacctccgccttccttaggaatttctcatctt 627  Q
    ||||||||| || |||||||| |||||||||||||| |||||||||||||| ||||| || |  ||||||||||| ||||| |||||||    
T  28219041 atccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcatgacattggccttccttagaaatttttcatctt 28219129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 17829 - 17757
Alignment:
Q  264 aatttaagtaacatgttccatgcagatttcatcataaacatcaatacttttagataatgataatcaacctaaa 336  Q
    |||||||||||||||||| ||||| |||| |  |||||| |||||| | ||||||||||||||| ||||||||    
T  17829 aatttaagtaacatgttcaatgcaaattttacaataaacttcaataatgttagataatgataattaacctaaa 17757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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