View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310-Insertion-5 (Length: 298)
Name: NF1310-Insertion-5
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310-Insertion-5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 10682335 - 10682049
Alignment:
| Q |
11 |
acttatgaattcgctactatatttttattctgccagactctgtcaactacatggaagccatctcctgcaaatggctgcgctgttggacttcttatgggag |
110 |
Q |
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| T |
10682335 |
acttatgaattcgctactatatttttattctgccagactctatcaactacatggaagccatctcctgcaaatggctgcgctgttggacttcttatgggag |
10682236 |
T |
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| Q |
111 |
ataaggtactcgtgtctcattctattctgcgatgtctggttttgtttaaaagtagtatactacctgaacaacattgccttaggtattccatcactatgtg |
210 |
Q |
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| T |
10682235 |
ataaggtact-gtgtctcattctattctgtgatgtctggttttgtttaaaagtagtatactacctgaacaacattgtcttaggtattcaatcactatgtg |
10682137 |
T |
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| Q |
211 |
gaagactgctatcctatttattgaacatttaattcttcttcaataaatttgggacgggtgagttttgtaaagatgcttttgaggatga |
298 |
Q |
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| T |
10682136 |
gaagactgctatcctatttattgaacatttaattcttcttcaataaatttgggacgggtgagttttgtaaagatgcttttgaggatga |
10682049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 7514110 - 7514214
Alignment:
| Q |
43 |
ccagactctgtcaactacatggaagccatctcctgcaaatggctgcgctgttggacttcttatgggagataaggtactcgtgtctcattctattctgcga |
142 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
7514110 |
ccagactctgtcaactacgtggaagccgcctcctgcaaatggctgtgctgttgggcttcttatgggagataaggtacttgtgtctcattctattctgcaa |
7514209 |
T |
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| Q |
143 |
tgtct |
147 |
Q |
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| T |
7514210 |
tgtct |
7514214 |
T |
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