View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13100_high_7 (Length: 251)

Name: NF13100_high_7
Description: NF13100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13100_high_7
NF13100_high_7
[»] chr4 (2 HSPs)
chr4 (18-156)||(18154228-18154366)
chr4 (18-118)||(6764469-6764569)
[»] scaffold0432 (1 HSPs)
scaffold0432 (19-156)||(397-534)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-153)||(221354-221489)
[»] scaffold0552 (1 HSPs)
scaffold0552 (18-118)||(1434-1535)
[»] chr6 (9 HSPs)
chr6 (162-234)||(2938108-2938180)
chr6 (162-234)||(2996731-2996803)
chr6 (173-234)||(2927808-2927869)
chr6 (162-234)||(2935247-2935322)
chr6 (162-234)||(2929957-2930031)
chr6 (162-233)||(2954731-2954802)
chr6 (162-234)||(2974655-2974727)
chr6 (162-234)||(2983514-2983586)
chr6 (162-193)||(2986421-2986452)
[»] scaffold0024 (1 HSPs)
scaffold0024 (162-234)||(34600-34672)
[»] chr7 (1 HSPs)
chr7 (162-234)||(3339673-3339745)
[»] chr3 (3 HSPs)
chr3 (18-83)||(39116877-39116942)
chr3 (191-230)||(49619063-49619102)
chr3 (190-230)||(49614088-49614128)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 18154228 - 18154366
Alignment:
Q  18 cacttttcggaccgagaaagaggaactgcttgacgttgcatattagaactcattaaagctcgattcgcatcattatgctcgataaaaggaatcagggaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18154228 cacttttcggaccgagaaagaggaactgcttgacgttgcatattagaactcattaaagctcgattcgcatcattatgctcgataaaaggaatcagggaag 18154327  T
Q  118 ctccaatagaaaaatattggaagggaaaaatacttcgaa 156  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18154328 ctccaatagaaaaatattggaagggaaaaatacttcgaa 18154366  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 6764569 - 6764469
Alignment:
Q  18 cacttttcggaccgagaaagaggaactgcttgacgttgcatattagaactcattaaagctcgattcgcatcattatgctcgataaaaggaatcagggaag 117  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  6764569 cacttttcagaccgagatagaggaactgcttgacgttgcatattagaactcattaaagctcgattcgcatcattatgctcaataaaaggaatcggggaag 6764470  T
Q  118 c 118  Q
    |    
T  6764469 c 6764469  T

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Target: scaffold0432 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 397 - 534
Alignment:
Q  19 acttttcggaccgagaaagaggaactgcttgacgttgcatattagaactcattaaagctcgattcgcatcattatgctcgataaaaggaatcagggaagc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  397 acttttcggaccgagaaagaggaactgcttgacgttgcatattagaactaattaaagctcgattcgcatcattatgctcaataaaaggaatcagggaagc 496  T
Q  119 tccaatagaaaaatattggaagggaaaaatacttcgaa 156  Q
    || |||||||||||||||||||||||||||||||||||    
T  497 tctaatagaaaaatattggaagggaaaaatacttcgaa 534  T

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Target: scaffold0002 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 221489 - 221354
Alignment:
Q  18 cacttttcggaccgagaaagaggaactgcttgacgttgcatattagaactcattaaagctcgattcgcatcattatgctcgataaaaggaatcagggaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || |||     
T  221489 cacttttcggaccgagaaagaggaactgcttgacgttgcatattagaactcattaaagcccgattcgcatcattgtgctcaataaaaggaatgagagaac 221390  T
Q  118 ctccaatagaaaaatattggaagggaaaaatacttc 153  Q
    | |||||||||||||||||||| |||||||||||||    
T  221389 ccccaatagaaaaatattggaaaggaaaaatacttc 221354  T

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Target: scaffold0552 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 1434 - 1535
Alignment:
Q  18 cacttttcggaccgagaaagaggaactgcttgacgttgcatatt-agaactcattaaagctcgattcgcatcattatgctcgataaaaggaatcagggaa 116  Q
    |||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  1434 cacttttcagaccgagatagaggaactgcttgacgttgcattttgagaactcattaaagctcgattcgcatcattatgctcaataaaaggaatcggggaa 1533  T
Q  117 gc 118  Q
    ||    
T  1534 gc 1535  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 2938180 - 2938108
Alignment:
Q  162 tcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2938180 tcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 2938108  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 2996731 - 2996803
Alignment:
Q  162 tcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  2996731 tcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtgag 2996803  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 2927869 - 2927808
Alignment:
Q  173 agaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2927869 agaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 2927808  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 2935322 - 2935247
Alignment:
Q  162 tcaacaatgaaagaaatcactaggaggcttgt---acaacttgcaagacagaacaaactgattgaagtaaagtgag 234  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  2935322 tcaacaatgaaagaaatcactaggaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 2935247  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 2930031 - 2929957
Alignment:
Q  162 tcaacaatgaaagaaatca--ctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 234  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2930031 tcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 2929957  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 2954802 - 2954731
Alignment:
Q  162 tcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtga 233  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  2954802 tcaacattgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtga 2954731  T

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Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 2974727 - 2974655
Alignment:
Q  162 tcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 234  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||  ||||| || ||||||    
T  2974727 tcaacaatgaaagaaatcactaggatgcttgtactacttgcaagacagaacaaactctttgaattatagtgag 2974655  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 2983586 - 2983514
Alignment:
Q  162 tcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 234  Q
    ||||||||||||||||| ||||||| |||||||| | |||||||||||||||||||| ||||| || ||||||    
T  2983586 tcaacaatgaaagaaatgactaggatgcttgtactatttgcaagacagaacaaactgtttgaattatagtgag 2983514  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 193
Target Start/End: Complemental strand, 2986452 - 2986421
Alignment:
Q  162 tcaacaatgaaagaaatcactaggaggcttgt 193  Q
    ||||||||||||||||||||||||||||||||    
T  2986452 tcaacaatgaaagaaatcactaggaggcttgt 2986421  T

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Target: scaffold0024 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 34600 - 34672
Alignment:
Q  162 tcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 234  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  34600 tcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgattgaagcaaagtgag 34672  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 3339745 - 3339673
Alignment:
Q  162 tcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgag 234  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  3339745 tcaacaaagaaagaaatcactaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagtgag 3339673  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 39116942 - 39116877
Alignment:
Q  18 cacttttcggaccgagaaagaggaactgcttgacgttgcatattagaactcattaaagctcgattc 83  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  39116942 cacttttcggaccgagaaagaggaactgcttgactttgcatattagaactcatttaagctcgattc 39116877  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 49619102 - 49619063
Alignment:
Q  191 tgtacaacttgcaagacagaacaaactgattgaagtaaag 230  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  49619102 tgtacaacttgcaagatagaacaaactgattgaagtaaag 49619063  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 49614128 - 49614088
Alignment:
Q  190 ttgtacaacttgcaagacagaacaaactgattgaagtaaag 230  Q
    ||||||||||||||| || | ||||||||||||||||||||    
T  49614128 ttgtacaacttgcaacactgcacaaactgattgaagtaaag 49614088  T

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