View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13100_low_1 (Length: 527)
Name: NF13100_low_1
Description: NF13100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13100_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 508
Target Start/End: Original strand, 4340282 - 4340776
Alignment:
| Q |
12 |
atgaatagggtgggaaaagtaatagccttctcataatgagttaaggcatagtttagctcattatagaacatcatgaccttttttcaccaagaacttactc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4340282 |
atgaatagggtgggaaaagtaatagccttctcataatgagttaaggcatattttagctcattatagaacatcatgaccttttttcaccaagaacttactc |
4340381 |
T |
|
| Q |
112 |
cttttttcttggtgcttctaggaaaatgtttcaaggagtggtctcctgtgttgatccaataataataaggtaatgatgatgttaactgtttgacatcctc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4340382 |
cttttttcttggtgcttctaggaaaatgtttcaaggagtggtctcctgtgttgatccaataataataaggcaatgatgatgttaactgtttgacatcctc |
4340481 |
T |
|
| Q |
212 |
ttgtacgccttcaacacatttccatttatgatatcctcatattttcagagagcttattgtcgagcgacatcctcgaattgacccttgatcaatgttccta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
4340482 |
ttgtacgccttcaacacatttccatttatgatatcctcatatttttagagagcttattgtggagcgacatcctcaacttgacccttgatcaatgttccta |
4340581 |
T |
|
| Q |
312 |
tcacccaagaaaacaaaacaccatttcccattctaggagtaagtgtaaaaacaaatgatctccaagaatgatatgtgattttaagagatattcataactc |
411 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4340582 |
tcacacaagaaaacaaaacaccatttcccattctaggagtaagtgtaaaaacaaatgatctccaagaatgatatgtgatttta--agatattcataactc |
4340679 |
T |
|
| Q |
412 |
tttcatgcataattaaggaatcatgaaaaatacccaaattcgatactctagcagaaaataaaccatcaacatttttcttcaaatagtttagtgacta |
508 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
4340680 |
tttcatgcatcattaaggaatcatgaaaaatacccaaatttgatactctagcactaaataaaccatcaacatttttcttaaagtagtttagtgacta |
4340776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 331
Target Start/End: Complemental strand, 8991866 - 8991718
Alignment:
| Q |
183 |
aatgatgatgttaactgtttgacatcctcttgtacgccttcaacacatttccatttatgatatcctcatattttcagagagcttattgtcgagcgacatc |
282 |
Q |
| |
|
|||||||| ||| |||||||| ||| |||||||| |||||||||||| || | | ||||| ||||||||||| | ||||||||| | ||| | |||| |
|
|
| T |
8991866 |
aatgatgaggtttactgtttgtcattctcttgtatgccttcaacacacttaaactcatgatgtcctcatatttctaaggagcttattatggagtgtcatc |
8991767 |
T |
|
| Q |
283 |
ctcgaattgacccttgatcaatgttcctatcacccaaga-aaacaaaaca |
331 |
Q |
| |
|
|| | || |||||| |||||||||||||| || ||||| |||||||||| |
|
|
| T |
8991766 |
ctttactt-acccttaatcaatgttcctataacacaagagaaacaaaaca |
8991718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University