View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13100_low_10 (Length: 244)

Name: NF13100_low_10
Description: NF13100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13100_low_10
NF13100_low_10
[»] chr5 (3 HSPs)
chr5 (19-234)||(10322037-10322252)
chr5 (120-208)||(8123394-8123482)
chr5 (120-206)||(671328-671414)
[»] chr7 (2 HSPs)
chr7 (120-208)||(42513258-42513346)
chr7 (119-208)||(38572407-38572496)
[»] chr2 (1 HSPs)
chr2 (120-210)||(4472702-4472792)
[»] chr1 (2 HSPs)
chr1 (120-209)||(18584081-18584170)
chr1 (120-219)||(21076160-21076259)
[»] chr6 (4 HSPs)
chr6 (120-209)||(13886454-13886543)
chr6 (119-208)||(7415504-7415593)
chr6 (165-209)||(4834628-4834672)
chr6 (120-176)||(33242716-33242771)
[»] chr4 (3 HSPs)
chr4 (120-201)||(36050519-36050600)
chr4 (120-201)||(36053778-36053859)
chr4 (120-175)||(9236784-9236839)
[»] chr3 (2 HSPs)
chr3 (120-209)||(30911921-30912010)
chr3 (120-203)||(36326368-36326451)
[»] scaffold1064 (1 HSPs)
scaffold1064 (120-192)||(358-430)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 10322252 - 10322037
Alignment:
Q  19 attagtgtggctatgtcgatgcttctgaggttgttttcaatccgaatatcgatcatgaattggagattttgcatcattggaagagaagtggcgacatggg 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10322252 attagtgtggctatgtcgatgcttctgaagttgttttcaatccgaatatcgttcatgaattggagattttgcatcatcggaagagaagtggcgacatggg 10322153  T
Q  119 gtgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatctaatatctattt 218  Q
    ||||||||||||| | ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10322152 gtgataggatagtcataataatgagcactaatacggtgacttacctaattttagaagtaagtatgactcactttaatctataaggatctaatatctattt 10322053  T
Q  219 tatcaaggagtattat 234  Q
    ||||||||||||||||    
T  10322052 tatcaaggagtattat 10322037  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 8123394 - 8123482
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatcta 208  Q
    |||||||||| ||||||||| |||||||||| |||||| | | |||||| ||||||| | ||||||| || ||||||||||||||||||    
T  8123394 tgataggatatttagaataaggagcactaatctggtgactcatctagttctagaagttattatgactgaccttaatctagaaggatcta 8123482  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 671328 - 671414
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatc 206  Q
    |||||||||| ||||||||| ||||| |||||| |||| |   ||| || |||| || | |||||||||| ||||||||||||||||    
T  671328 tgataggatatttagaataaggagcattaatatagtgactcggctaattctagatgttattatgactcaccttaatctagaaggatc 671414  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 42513346 - 42513258
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatcta 208  Q
    |||||||||| ||||||||| |||||||||| |||||| | | |||||| ||||||| | |||||||||| ||||||||||||||||||    
T  42513346 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgactcaccttaatctagaaggatcta 42513258  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 38572496 - 38572407
Alignment:
Q  119 gtgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatcta 208  Q
    ||||||| ||| ||||||||||||| |||||| || ||| | | |||||| ||||||| | |||||||||| |||||||| |||||||||    
T  38572496 gtgatagtatatttagaataatgagtactaatgtgctgactcagctagttctagaagttattatgactcaccttaatctaaaaggatcta 38572407  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 4472702 - 4472792
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatctaat 210  Q
    |||||||||||||| ||||| ||||| | ||||||||| | |||||||| |||||| ||  |||| |||| ||||||||||||||||||||    
T  4472702 tgataggatagttaaaataaggagcatttatatggtgactcacctagttctagaagcaaagatgattcaccttaatctagaaggatctaat 4472792  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 18584170 - 18584081
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatctaa 209  Q
    |||||||||| ||||||||| ||||| |||| |||||  ||| |||||| || |||| | |||||||||| |||||||||||||||||||    
T  18584170 tgataggatatttagaataaggagcattaatgtggtggcttagctagttataaaagttattatgactcaccttaatctagaaggatctaa 18584081  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 21076259 - 21076160
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatctaatatctatttt 219  Q
    ||||||||| |||||||||| ||| |||||| |||||| | |||||||| |||||| || ||||| |||| ||||| || ||||||||||| | ||||||    
T  21076259 tgataggatggttagaataaggagtactaatgtggtgactcacctagttctagaagcaaatatgattcaccttaatttaaaaggatctaatctgtatttt 21076160  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 13886454 - 13886543
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatctaa 209  Q
    |||||||||||||||||||| |||||||||| |||||| |   |||||| || || | | |||||||||| ||||||||||| |||||||    
T  13886454 tgataggatagttagaataaggagcactaatgtggtgactctgctagttctataaattattatgactcaccttaatctagaaagatctaa 13886543  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 7415504 - 7415593
Alignment:
Q  119 gtgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatcta 208  Q
    |||||||| || ||||||||||||| |||||| |||||| | | |||||| |||||   | |||||||||  ||||| ||||||||||||    
T  7415504 gtgatagggtacttagaataatgagtactaatgtggtgactcagctagttctagaaaatattatgactcatcttaatttagaaggatcta 7415593  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 4834628 - 4834672
Alignment:
Q  165 agttttagaagtaagtatgactcactttaatctagaaggatctaa 209  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||    
T  4834628 agttctagaagttattatgactcaccttaatctagaaggatctaa 4834672  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 33242716 - 33242771
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagt 176  Q
    |||||||||| ||||||||| ||||||||||||||||| | | |||||| |||||||    
T  33242716 tgataggata-ttagaataaggagcactaatatggtgactcagctagttctagaagt 33242771  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 36050519 - 36050600
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaa 201  Q
    |||||||||| ||||||||||||| |||||| |||||| |  ||||||| ||||||  |||||||||||  |||||||||||    
T  36050519 tgataggatatttagaataatgagtactaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 36050600  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 36053778 - 36053859
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaa 201  Q
    |||||||||| ||||||||||||| |||||| |||||| |  ||||||| ||||||  |||||||||||  |||||||||||    
T  36053778 tgataggatatttagaataatgagtactaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 36053859  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 9236784 - 9236839
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaag 175  Q
    |||||||||| ||| ||||||||||||| || |||||| ||||| |||||||||||    
T  9236784 tgataggataattaaaataatgagcactcatgtggtgacttaccaagttttagaag 9236839  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 30911921 - 30912010
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaaggatctaa 209  Q
    |||||||||| ||||||||||||| |||||| || ||| |    ||||| ||||||| | |||||||||| |||||||||||||||||||    
T  30911921 tgataggatacttagaataatgagtactaatgtgatgactcggttagttctagaagttattatgactcaccttaatctagaaggatctaa 30912010  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 36326368 - 36326451
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcactttaatctagaagg 203  Q
    |||||| ||| ||||||||||||| | |||| |||||| | | |||||| ||||||| | |||||||||| |||||||||||||    
T  36326368 tgatagcatatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg 36326451  T

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Target: scaffold1064 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 358 - 430
Alignment:
Q  120 tgataggatagttagaataatgagcactaatatggtgatttacctagttttagaagtaagtatgactcacttt 192  Q
    |||||||||| ||| |||||||| |||| || |||||| ||||| ||||||||||| ||  ||||||||||||    
T  358 tgataggataattaaaataatgatcactcatgtggtgacttaccaagttttagaagcaaaaatgactcacttt 430  T

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