View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13100_low_2 (Length: 495)
Name: NF13100_low_2
Description: NF13100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13100_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 44115327 - 44115817
Alignment:
| Q |
1 |
accaaactgaataaaaacagaactacacaaactact--aattcatctagcag---------atacctagacagtgattcaattagcgaaagggcagaacc |
89 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44115327 |
accaaactgaataaaaacagaactacacaaactactctaattcatctagcagctgtatcaaatacctagacagtgattcaattagcgaaagggcagaacc |
44115426 |
T |
|
| Q |
90 |
attgtagtcttgcggcaaacgttcaagctgcaataataaacggttacttttacagttctctgactaacgttcttcttacgttcttgaatatatgtcatta |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
44115427 |
attgtagtcttgcggcaaacgttcaagctgcaataataaacggttacttttacagttctctaactaactttcttcttacgttcttgaatatatgtcatta |
44115526 |
T |
|
| Q |
190 |
attatttaccttcaaatttcccagctcgcttagggaatcggtgaaagttttcgtgagaggttttagctcatcgtgctgcaagaacatgacaatcttaaca |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44115527 |
attatttaccttcaaatttcccagctcgcttagggaatcggtgaaagttttcgtgagaggttttagctcatcgtgctgcaagaacatgacaatcttaaca |
44115626 |
T |
|
| Q |
290 |
ttgcattctgtgcgtacattaataaacaacaaataatgagtaacattaactaaccggaaatgcatgagtcatatagttgtcataggcatggtgaaaccta |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44115627 |
ttgcattctgtgcgtacattaataaacaacaaataatgagtaacattaactaaccggaaatgcatgagtcatatagttgtcataggcatggtgaaaccta |
44115726 |
T |
|
| Q |
390 |
caaacaacagtaacagaaaaacaagagtgataagtatttatttaatttcaaataagaacaaaatattactcaaaatttggaccaactttct |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44115727 |
caaacaacagtaacagaaaaacaagagtgataagtatttatttaatttcaaataagaacaaaatattactcaaaatttggaacaactttct |
44115817 |
T |
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