View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13100_low_7 (Length: 295)
Name: NF13100_low_7
Description: NF13100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13100_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 48644854 - 48644594
Alignment:
| Q |
20 |
tttctaacacgtactgaacaatcatcgtatagaaacttgtgaacaatcctaagactctttgtcaaaacacattcctcccacgttttctccttaagcacca |
119 |
Q |
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| T |
48644854 |
tttctaacacgcactgaacaatcatcgtatagaaacttgtgaacaatcctaagactctttgtcaaaacacaatcctcccaagttttctccttaagcacca |
48644755 |
T |
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| Q |
120 |
cctccgtagcatcaagacggtgcatgttcctcttccacataccataaagcctatgaatcttttgaacttgtctatttgcaagcttaatattatttatttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48644754 |
cctccgtagcatcaagacggtgcatgttcctcttccacataccataaagcctatgaatcttttgaacttgtctatttgcaagcttaatattatttatttt |
48644655 |
T |
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| Q |
220 |
aagagcatcaatagcaacttctagaagcttcttcatggttctttcatcaacttttccttct |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48644654 |
aagagcatcaatagcaacttctagaagcttcttcatggttctttcatcaacttttccttct |
48644594 |
T |
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