View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13101_high_3 (Length: 434)

Name: NF13101_high_3
Description: NF13101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13101_high_3
NF13101_high_3
[»] chr2 (8 HSPs)
chr2 (40-337)||(8248186-8248482)
chr2 (174-340)||(8237153-8237319)
chr2 (1-36)||(3044320-3044355)
chr2 (40-98)||(8243080-8243138)
chr2 (195-236)||(8243809-8243850)
chr2 (164-228)||(8233968-8234032)
chr2 (39-98)||(8448998-8449056)
chr2 (163-233)||(8447379-8447449)
[»] chr8 (2 HSPs)
chr8 (1-36)||(9932181-9932216)
chr8 (1-36)||(25582666-25582701)
[»] chr5 (1 HSPs)
chr5 (1-36)||(26369020-26369055)
[»] chr3 (1 HSPs)
chr3 (1-35)||(10436515-10436549)
[»] chr4 (1 HSPs)
chr4 (1-37)||(40850793-40850829)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-36)||(124275-124310)
[»] chr6 (1 HSPs)
chr6 (1-36)||(1840592-1840627)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 40 - 337
Target Start/End: Original strand, 8248186 - 8248482
Alignment:
Q  40 tattattcacattcataaaatatatgtcacgaaatacactaataacaaggaaaagaattttgtaccnnnnnnnnnncaa-----ggaaaagaattaaagt 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||           ||     ||||||||||||||||    
T  8248186 tattattcacattcataaaatatatgtcacgaaatacactaataacaacgaaaagaattttgtaccaaaaaaaaaagaaaaaaaggaaaagaattaaagt 8248285  T
Q  135 acgccagatcatacttagttaaagtaagaaaaaggtgaatgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaacctctt 234  Q
    ||||| ||||||||  ||||||||| |||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  8248286 acgccggatcatacgaagttaaagtgagaaaaagatgaatgacatgccgcataatgcgaaacgaataacgagcatacttccatttttccaacaacctctt 8248385  T
Q  235 tcgccaaagatccttaaaattggtcattgtttttaagctttcttccgttttctttaaccgctcacatggtttcgaaattggattcattagcataaacttc 334  Q
    ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  8248386 tcggcaaagttccttaaagttggtcattgtttttaagctttcttccgttttcttta------cacatggtttcgaaattggattcattagcataaacttc 8248479  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 340
Target Start/End: Original strand, 8237153 - 8237319
Alignment:
Q  174 tgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaacctctttcgccaaagatccttaaaattggtcattgtttttaagct 273  Q
    |||||||||| ||  ||||||||||||||||| |||||||||||||||||||||   | | | |   ||| | |||||||||| || ||| ||| ||| |    
T  8237153 tgacacgccgtattgtgcggagcgaataacgaacatacttccatttttacaacagtttttcttgatgaagtttcttaaaattgatcgttggtttaaagat 8237252  T
Q  274 ttcttccgttttctttaaccgctcacatggtttcgaaattggattcattagcataaacttcaccata 340  Q
    |||||| ||||| ||||||| ||||| ||||||| || ||||||||||  ||||  |||||||||||    
T  8237253 ttcttcagttttgtttaaccactcacgtggtttcaaacttggattcatatgcatgtacttcaccata 8237319  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3044355 - 3044320
Alignment:
Q  1 caatcaaagaaatctggggaacaaaaacaggaaaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  3044355 caatcaaagaaatctggggaacaaaaacaggaaaaa 3044320  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 8243080 - 8243138
Alignment:
Q  40 tattattcacattcataaaatatatgtcacgaaatacactaataacaaggaaaagaatt 98  Q
    ||||||||||||| |||||||||| ||||||||||||| | ||||||| ||||| ||||    
T  8243080 tattattcacatttataaaatataagtcacgaaatacattgataacaaagaaaataatt 8243138  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 8243809 - 8243850
Alignment:
Q  195 gcgaataacgagcatacttccatttttacaacaacctctttc 236  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  8243809 gcgaataacgagcatacttccatttttaaaacaatctctttc 8243850  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 8233968 - 8234032
Alignment:
Q  164 aaaaggtgaatgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaa 228  Q
    ||||| |||||||||  ||||||  | |||||||||||| || ||||||||||||||||||||||    
T  8233968 aaaagatgaatgacataccgcattgtacggagcgaataatgaacatacttccatttttacaacaa 8234032  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 8448998 - 8449056
Alignment:
Q  39 ttattattcacattcataaaatatatgtcacgaaatacactaataacaaggaaaagaatt 98  Q
    |||||||||||||| ||||| |||||||||| ||||||| || ||||||||||| |||||    
T  8448998 ttattattcacatttataaa-tatatgtcacaaaatacattactaacaaggaaaggaatt 8449056  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 8447379 - 8447449
Alignment:
Q  163 aaaaaggtgaatgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaacctct 233  Q
    ||||| |||||| ||| ||||||| ||  ||| ||||||||  |||||||| |||||||||||||||||||    
T  8447379 aaaaaagtgaataacatgccgcattatatggaacgaataacatgcatactttcatttttacaacaacctct 8447449  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9932181 - 9932216
Alignment:
Q  1 caatcaaagaaatctggggaacaaaaacaggaaaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  9932181 caatcaaagaaatctggggaacaaaaacaggaaaaa 9932216  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25582666 - 25582701
Alignment:
Q  1 caatcaaagaaatctggggaacaaaaacaggaaaaa 36  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25582666 caatcaaagaaatctggggaacaaaaagaggaaaaa 25582701  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26369020 - 26369055
Alignment:
Q  1 caatcaaagaaatctggggaacaaaaacaggaaaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  26369020 caatcaaagaaatctggggaacaaaaacaggaaaaa 26369055  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10436515 - 10436549
Alignment:
Q  1 caatcaaagaaatctggggaacaaaaacaggaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10436515 caatcaaagaaatctggggaacaaaaacaggaaaa 10436549  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40850829 - 40850793
Alignment:
Q  1 caatcaaagaaatctggggaacaaaaacaggaaaaat 37  Q
    |||||||||||||| ||||||||||||||||||||||    
T  40850829 caatcaaagaaatccggggaacaaaaacaggaaaaat 40850793  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 124275 - 124310
Alignment:
Q  1 caatcaaagaaatctggggaacaaaaacaggaaaaa 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  124275 caatcaaagaaatccggggaacaaaaacaggaaaaa 124310  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1840627 - 1840592
Alignment:
Q  1 caatcaaagaaatctggggaacaaaaacaggaaaaa 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  1840627 caatcaaagaaatctggggaacaaaaacagaaaaaa 1840592  T

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