View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13101_high_4 (Length: 391)
Name: NF13101_high_4
Description: NF13101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13101_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 3598413 - 3598099
Alignment:
| Q |
20 |
gaatagaattcattgcacattatcggatgactatgccgtgaaaatgcaaaagtttttggataatcatgattatcacttcctgtgattgttttgtaaaact |
119 |
Q |
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| T |
3598413 |
gaatagaattcattgcacattatcggatgactatgccgtgaaaatgtaaaagtttttggataatcatgattatcacttcctgtgattgttttgtaaaact |
3598314 |
T |
|
| Q |
120 |
tcaggtaaagttcctaaatctttagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgttgatttcaacctctgaattatc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3598313 |
tcaggtaaagttcctaaatctttagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgttgatttcaacctctgaagtatc |
3598214 |
T |
|
| Q |
220 |
attaactcgattcgagatgtgactatttttagtagtgaaattgagattcacatttctactactttgtctgttatttcttatatttctttctttatttcca |
319 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598213 |
attaacttgattcgagatgtgactatttttagtagtgaaattgagattcacgtttctactactttgtctgttatttcttatatttctttctttatttcct |
3598114 |
T |
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| Q |
320 |
ccatatttcatgctt |
334 |
Q |
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| T |
3598113 |
ctatatttcatgctt |
3598099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 4356611 - 4356973
Alignment:
| Q |
20 |
gaatagaattcattgcacattatcggatgactatgccgtgaaaatgcaaaagtttttggataatcatgatt-atcacttcctgtgattgttttgtaaaac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |||||||||||||| ||| |||||||||| |||| || ||||| |
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| T |
4356611 |
gaatagaattcattgcacattatcggatgactatgccgtgagaatgcaacaattttaggataatcatgattcatcgcttcctgtgactgttctgcaaaac |
4356710 |
T |
|
| Q |
119 |
ttcaggtaaagttcctaaatctttagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgttgatttcaacctctgaattat |
218 |
Q |
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|||||||||||||||| |||||||||| || ||| |||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| |||| ||| |
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| T |
4356711 |
ttcaggtaaagttccttaatctttagtatttaaatttttatgtcaactatagtgtttttctataatattcatcatatattgatctcaacctttgaagtat |
4356810 |
T |
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| Q |
219 |
cattaactcgattcgagat--gtgactatttttagtagtgaaattgagattcacatttctactactttgtctgttatttcttatatttctttctttattt |
316 |
Q |
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|| |||| || | ||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4356811 |
caggaacttgagttgagatacgtgactatttttgttagcgaaattgagattcacgtttctactactttgtctgttatttcttatatttctttctttattt |
4356910 |
T |
|
| Q |
317 |
ccaccatatttcatgcttatgattgtgtgtcaatataattttgttgaataatgtattagcctttg |
381 |
Q |
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|| | |||||||||||||||| | ||| | |||||| ||||||||||||||||||||||||||| |
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| T |
4356911 |
cctc--tatttcatgcttatgactatgtataaatatatttttgttgaataatgtattagcctttg |
4356973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 379
Target Start/End: Original strand, 24455633 - 24455738
Alignment:
| Q |
272 |
tttctactactttgtctgttatttcttatatttctttctttatttccaccatatttcatgcttatgattgtgtgtcaatataattttgttgaataatgta |
371 |
Q |
| |
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|||||||||||| || |||||||| | |||||||| ||| |||||| | |||||||||||| |||||| || ||| || ||||||||||| ||| | |
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| T |
24455633 |
tttctactacttcgttagttatttcatctatttcttgcttcatttcctc--tatttcatgcttctgattgagtatcatcctatttttgttgaattatgca |
24455730 |
T |
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| Q |
372 |
ttagcctt |
379 |
Q |
| |
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|||||||| |
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|
| T |
24455731 |
ttagcctt |
24455738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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