View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13101_low_1 (Length: 912)
Name: NF13101_low_1
Description: NF13101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13101_low_1 |
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| [»] scaffold0290 (1 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 23458616 - 23458037
Alignment:
| Q |
1 |
aactaaacatcaaagaatacattgtcgaaaagaaggagcttgaaactaaagatttgacggctgaaattgaagagttgaaggctaaaattgaagaattgag |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23458616 |
aactaaacatcaaagaagacattgtcgaaaagaaggagcttgaaactaaagatttgacggctgaaattgaagagttgaaggctaaaattgaagaatcgag |
23458517 |
T |
|
| Q |
101 |
ggatgaaattccaatgcaccacaaagctgggtttgataaagccctaaagaaagtttcagtttctatatctgaaattaaaccatgaccattttaattggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23458516 |
ggatgaaattccaatgcaccacaaagctgggtttgataaagccctaaagaaagtttcagtttctatatctgaaattaaaccatgaccattttaattggat |
23458417 |
T |
|
| Q |
201 |
cggagaaaattattcatctatgttttggatagaaagtttaccttgatgaaaggtattgcaagggattaacgccttaaatttttgtagttgaagccttttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23458416 |
cggagaaaattattcatctatgttttggatagaaagtttaccttgatgaaaggtactgcaatggattaacgccttaaatttttgtagttgaagccttttg |
23458317 |
T |
|
| Q |
301 |
aactctttgtgaacttgtatgggtttcattttgggatcatttgtgttttgtttttagatttgggattatatatcgtatctatgaactcctatttagtatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23458316 |
aactctttgtgaacttgtatgggtttcattttgggatcctttgtgttttgtttttagatttgggattatatatcgtatctatgaactcctatttagtatg |
23458217 |
T |
|
| Q |
401 |
tttatctaattatattttcaaactcttgttcaattattgtttgtatggttagcaaatagtgacaccaaattgttgttaactgaagcttgctagtgttaga |
500 |
Q |
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| T |
23458216 |
tttatctaattatattttcaaactcttgttcaattattgtttgtatggttagcaaatagtgacaccaaattgttgttaactgaagcttgctagtgttaga |
23458117 |
T |
|
| Q |
501 |
tatttagctgtagatgcatgcagctgaagttgttagctgcgaactttttaagattaatttccaagtcttgaacattgaaa |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23458116 |
tatttagctgtagatgcatgcagctgaagttgttagctgcgaactttttaagattaatttccaagtcttgaacattgaaa |
23458037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 576 - 896
Target Start/End: Complemental strand, 23457878 - 23457558
Alignment:
| Q |
576 |
tgaaataagactcgctacgggaagagtaagaagtttgaagcatcaaattcaaggtagcaaagctcggataatcgatgaaaggcgtggaaaaattatgatg |
675 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23457878 |
tgaaataagactcgctacgggaagagtaagaagtttgaagcatcaaattcaaggtagcaaagctcggataatcgatgaaaggcgtggaaaaattatgatg |
23457779 |
T |
|
| Q |
676 |
aatgtgtccttcctcaagtgaatcgagagaaactgaagtcacctccagtgtgataatcggattgcttggttggcgatgtcaagtacatgtaagaattgtc |
775 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23457778 |
aatgtgtccttcctcaagtgaatcgagagaaactgaagtcacctccagtgtgataatcggattgcttggttggcgatgtcaagtacacgtaagaattgtc |
23457679 |
T |
|
| Q |
776 |
aattaattaagaagggaatgtgcgccggataacagaagcgcatgtaagatccagaaggttttcctttgcaactcagagtaatgatcaagccatcaagtat |
875 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23457678 |
aattaattaagaagggaatgtgcgccggataacagaagcgcatgtaagatccagaaggttttccttttcaactcagagtaatgatcaagccatcaagtat |
23457579 |
T |
|
| Q |
876 |
gataaccaattttgtacaaag |
896 |
Q |
| |
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||||||||||||||||||||| |
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| T |
23457578 |
gataaccaattttgtacaaag |
23457558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 23462431 - 23462316
Alignment:
| Q |
65 |
aattgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaagctgggtttgataaagccctaaagaaagtttcagtttct |
164 |
Q |
| |
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||||||||| ||||| ||| |||||||||| ||| || |||||||||| |||| |||| |||||||||||||| || | ||| || ||| |||||| |
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| T |
23462431 |
aattgaagatttgaaagctgaaattgaagaggtgaaggctgaaattccagtgcagtacaatgctgggtttgataaggcagtcaagcaaattttagtttca |
23462332 |
T |
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| Q |
165 |
atatctgaaattaaac |
180 |
Q |
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| T |
23462331 |
atatctgaacttaaac |
23462316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 602 - 685
Target Start/End: Original strand, 2570 - 2653
Alignment:
| Q |
602 |
taagaagtttgaagcatcaaattcaaggtagcaaagctcggataatcgatgaaaggcgtggaaaaattatgatgaatgtgtcct |
685 |
Q |
| |
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||||||| |||||| || || |||||||||||||| |||||||| |||||||||||||||| || | ||||||| ||||||||| |
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| T |
2570 |
taagaaggttgaagtattaagttcaaggtagcaaaactcggatagtcgatgaaaggcgtggtaagaatatgatggatgtgtcct |
2653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 596 - 655
Target Start/End: Original strand, 32145792 - 32145851
Alignment:
| Q |
596 |
gaagagtaagaagtttgaagcatcaaattcaaggtagcaaagctcggataatcgatgaaa |
655 |
Q |
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||||||||||||||||||||||||| |||||||| || ||| |||||||| ||||||||| |
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| T |
32145792 |
gaagagtaagaagtttgaagcatcatattcaaggaagaaaaactcggatagtcgatgaaa |
32145851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 74638 - 74565
Alignment:
| Q |
66 |
attgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaagctgggtttgataa |
139 |
Q |
| |
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|||||||| ||||| ||| |||||||||| ||| | |||||||||| |||| ||||| |||||||||||||| |
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| T |
74638 |
attgaagatttgaaagctgaaattgaagaggtgaagactgaaattccagtgcagcacaatgctgggtttgataa |
74565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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