View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13101_low_11 (Length: 244)
Name: NF13101_low_11
Description: NF13101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13101_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 41447425 - 41447612
Alignment:
| Q |
44 |
tagtagtcactcttacacacaggttctccatggaaaattattcttaaaaataaatttaaaagacttgaaacaaaccatttatattaactacctatgttat |
143 |
Q |
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| T |
41447425 |
tagtagtcactcttacacacaggttctccatggaaaattattcttaaaaataaatttaaaagacttgaaacaaaccatttatattaactacctatgttat |
41447524 |
T |
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| Q |
144 |
atagatttgaagggattccggttatatttcccttgaatataattgtacaaattcattgcagaacaatattaatgcaactattcatatt |
231 |
Q |
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| T |
41447525 |
atagatttgaagggattccgattatatttcccttgaatataattgtacaaattcattacagaacaatattaatgcaactattcatatt |
41447612 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 41441361 - 41441422
Alignment:
| Q |
170 |
tttcccttgaatataattgtacaaattcattgcagaacaatattaatgcaactattcatatt |
231 |
Q |
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| T |
41441361 |
tttcccttgaatataattgcacaaattcattgcagaacaatattaatgcaactattcatatt |
41441422 |
T |
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