View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13101_low_12 (Length: 239)

Name: NF13101_low_12
Description: NF13101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13101_low_12
NF13101_low_12
[»] chr1 (17 HSPs)
chr1 (101-221)||(33124335-33124460)
chr1 (101-171)||(51109848-51109918)
chr1 (101-171)||(29207842-29207912)
chr1 (101-171)||(30004657-30004727)
chr1 (76-157)||(28885434-28885515)
chr1 (101-164)||(254-317)
chr1 (76-159)||(48722127-48722210)
chr1 (101-158)||(17487041-17487098)
chr1 (101-161)||(20905045-20905105)
chr1 (101-171)||(20470857-20470928)
chr1 (105-171)||(6150971-6151037)
chr1 (101-155)||(14084463-14084517)
chr1 (105-161)||(50552746-50552802)
chr1 (101-161)||(30899905-30899969)
chr1 (106-155)||(12971655-12971704)
chr1 (106-171)||(42740355-42740419)
chr1 (106-171)||(18127688-18127753)
[»] chr2 (20 HSPs)
chr2 (101-171)||(41096289-41096359)
chr2 (76-171)||(19367174-19367269)
chr2 (101-171)||(26151497-26151567)
chr2 (101-158)||(4856237-4856294)
chr2 (101-171)||(2064049-2064119)
chr2 (101-159)||(6530906-6530964)
chr2 (101-159)||(34061627-34061685)
chr2 (101-154)||(13020666-13020719)
chr2 (76-157)||(7993851-7993932)
chr2 (101-161)||(18676069-18676129)
chr2 (101-172)||(12269670-12269741)
chr2 (101-172)||(45619220-45619291)
chr2 (101-171)||(25222569-25222639)
chr2 (101-171)||(45042635-45042705)
chr2 (106-171)||(1226017-1226080)
chr2 (106-171)||(17117395-17117460)
chr2 (101-166)||(36481639-36481704)
chr2 (101-158)||(42759518-42759575)
chr2 (124-171)||(13997580-13997627)
chr2 (106-166)||(38985464-38985523)
[»] chr8 (14 HSPs)
chr8 (101-171)||(3445777-3445847)
chr8 (101-161)||(18420365-18420425)
chr8 (101-171)||(13585550-13585620)
chr8 (101-171)||(44664353-44664423)
chr8 (101-154)||(7858329-7858382)
chr8 (101-172)||(27074718-27074789)
chr8 (101-159)||(42951556-42951614)
chr8 (101-158)||(1004302-1004359)
chr8 (101-158)||(43926088-43926145)
chr8 (101-159)||(18112369-18112426)
chr8 (101-171)||(43967817-43967887)
chr8 (101-157)||(3471843-3471899)
chr8 (106-166)||(34523709-34523769)
chr8 (106-166)||(3574850-3574910)
[»] chr7 (15 HSPs)
chr7 (101-171)||(33910309-33910379)
chr7 (101-158)||(11672835-11672892)
chr7 (101-157)||(4100205-4100261)
chr7 (101-161)||(6379844-6379904)
chr7 (106-165)||(29730845-29730904)
chr7 (106-165)||(29742043-29742102)
chr7 (101-172)||(42160871-42160942)
chr7 (101-155)||(7636089-7636143)
chr7 (101-159)||(36796133-36796191)
chr7 (101-173)||(12251031-12251104)
chr7 (101-158)||(44893790-44893847)
chr7 (106-166)||(1366258-1366318)
chr7 (101-142)||(18015359-18015400)
chr7 (106-171)||(44875909-44875974)
chr7 (106-171)||(26282282-26282347)
[»] chr4 (12 HSPs)
chr4 (76-171)||(23256817-23256911)
chr4 (101-171)||(53011959-53012029)
chr4 (101-161)||(27632643-27632703)
chr4 (102-166)||(29221378-29221442)
chr4 (101-158)||(41038496-41038553)
chr4 (105-158)||(11681504-11681557)
chr4 (105-158)||(11689783-11689836)
chr4 (76-158)||(19661600-19661682)
chr4 (101-170)||(32130540-32130609)
chr4 (101-171)||(16887733-16887803)
chr4 (101-155)||(44478284-44478338)
chr4 (106-166)||(35653735-35653794)
[»] chr6 (9 HSPs)
chr6 (105-172)||(6361011-6361078)
chr6 (76-159)||(2618572-2618655)
chr6 (101-161)||(3514608-3514668)
chr6 (105-158)||(29401387-29401440)
chr6 (101-157)||(22503988-22504044)
chr6 (101-171)||(31258321-31258392)
chr6 (101-157)||(29149635-29149690)
chr6 (105-172)||(12614464-12614531)
chr6 (106-157)||(29308231-29308282)
[»] chr3 (17 HSPs)
chr3 (106-171)||(28132484-28132549)
chr3 (76-166)||(52654877-52654967)
chr3 (101-171)||(6715683-6715753)
chr3 (101-155)||(27110636-27110690)
chr3 (101-166)||(46791451-46791514)
chr3 (101-161)||(8364417-8364477)
chr3 (76-171)||(29387498-29387593)
chr3 (101-174)||(13401702-13401775)
chr3 (105-162)||(23164330-23164387)
chr3 (101-166)||(25598837-25598902)
chr3 (101-166)||(51939309-51939374)
chr3 (101-161)||(27729530-27729590)
chr3 (119-171)||(51147200-51147252)
chr3 (106-165)||(1649597-1649656)
chr3 (122-165)||(40151888-40151931)
chr3 (106-157)||(43905617-43905668)
chr3 (76-166)||(21784535-21784624)
[»] scaffold0181 (1 HSPs)
scaffold0181 (101-158)||(16896-16953)
[»] chr5 (15 HSPs)
chr5 (101-171)||(13474875-13474945)
chr5 (101-171)||(37047027-37047097)
chr5 (106-165)||(931618-931677)
chr5 (101-166)||(12661552-12661617)
chr5 (76-166)||(13424084-13424174)
chr5 (109-158)||(26377538-26377587)
chr5 (101-160)||(36718389-36718448)
chr5 (106-166)||(7390156-7390215)
chr5 (124-171)||(3349479-3349526)
chr5 (106-157)||(43511870-43511921)
chr5 (124-166)||(41612990-41613032)
chr5 (101-158)||(13656456-13656512)
chr5 (124-161)||(20976249-20976286)
chr5 (101-158)||(26312231-26312288)
chr5 (122-166)||(10591030-10591074)
[»] scaffold0564 (1 HSPs)
scaffold0564 (101-171)||(1306-1376)
[»] scaffold0126 (1 HSPs)
scaffold0126 (101-158)||(16955-17012)
[»] scaffold0100 (1 HSPs)
scaffold0100 (101-158)||(45938-45995)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 33124460 - 33124335
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctggctttagtgtatat-----gttacgtcaa 195  Q
    |||||||||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||     ||||||||||    
T  33124460 ttacgttttattttactaggagcctattttaaaaagagagccgagtcttctattttacaggaacgatcctggctttagtgtatatgttatgttacgtcaa 33124361  T
Q  196 ttttcgttaaagaaaagagagtgacg 221  Q
    ||||||||||||||||||||||||||    
T  33124360 ttttcgttaaagaaaagagagtgacg 33124335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 51109918 - 51109848
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  51109918 ttacgttttattttactaggggcctattttaaaaagagagccgagcctcctatttcacagggacggccctg 51109848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 29207912 - 29207842
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||| ||  |||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  29207912 ttacgttttattttactatggacctattttagaaagagagtcgagcctcctatttcacaggaacggtcctg 29207842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 30004727 - 30004657
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||| | |||||||||    
T  30004727 ttacgttttattttactatgggcctattttaaaaagagagccgagcctcctattttacatggacggtcctg 30004657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 28885515 - 28885434
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttca 157  Q
    ||||||||||||||||||       ||||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||    
T  28885515 aatgaaatttaactacacaaaaaaattacgttttattttactaggtatctattttaaaaagagagtcgagcctcctatttca 28885434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 254 - 317
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaac 164  Q
    ||||||||||||||||| || | |||||||||||||||| |||||||| |||||||||||||||    
T  254 ttacgttttattttactgggagcctattttaaaaagagaaccgagcctcctatttcacaggaac 317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 48722210 - 48722127
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcaca 159  Q
    ||||||||||||||||||       |||||||||||||||||| ||  ||||||||||||||||| ||||||| ||||||||||    
T  48722210 aatgaaatttaactacacaacaaaattacgttttattttactatggacctattttaaaaagagagtcgagcctcctatttcaca 48722127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 17487098 - 17487041
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||    
T  17487098 ttacgttttattttactaagggcctattttaaaaagagagtcgagcctcctatttcac 17487041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 20905105 - 20905045
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacagg 161  Q
    ||||||||||| |||||||||  ||||||||||||||||| ||||||| ||||||||||||    
T  20905105 ttacgttttatcttactagggacctattttaaaaagagagtcgagcctcctatttcacagg 20905045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 20470857 - 20470928
Alignment:
Q  101 ttacgttttattttactaggggtctatttt-aaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||| || |||| ||||    
T  20470857 ttacgttttattttactaggggcctgtttttaaaaagagagccgagcctcctatttcacggggacggccctg 20470928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 6150971 - 6151037
Alignment:
Q  105 gttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||| |||  |||||||||||||||| ||||||| |||||||||||| |||| ||||    
T  6150971 gttttattttactaagggcttattttaaaaagagagtcgagcctcctatttcacagggacggccctg 6151037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 14084517 - 14084463
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctattt 155  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||    
T  14084517 ttacgttttattttattataggtctattttaaaaagagagccgagcctcctattt 14084463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 50552746 - 50552802
Alignment:
Q  105 gttttattttactaggggtctattttaaaaagagagccgagccttctatttcacagg 161  Q
    |||||||||||||| |||| ||||||||||||||||| |||||| |||||| |||||    
T  50552746 gttttattttactaagggtttattttaaaaagagagctgagcctcctattttacagg 50552802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 30899905 - 30899969
Alignment:
Q  101 ttacgttttattttactag----gggtctattttaaaaagagagccgagccttctatttcacagg 161  Q
    ||||||||||||||||||     ||||||||||||||||||||||||| ||| ||||||||||||    
T  30899905 ttacgttttattttactaattaagggtctattttaaaaagagagccgaacctcctatttcacagg 30899969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 12971655 - 12971704
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctattt 155  Q
    |||||||||| ||||||| ||||||||| |||||||||||||| ||||||    
T  12971655 ttttattttattaggggtttattttaaatagagagccgagcctcctattt 12971704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 42740355 - 42740419
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||| |||| |||||||||||| ||| |||||||| |||||||| |||||||| ||||    
T  42740355 ttttattttact-ggggcctattttaaaaatagaaccgagcctcctatttcataggaacggccctg 42740419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 18127753 - 18127688
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||||| ||  ||||||| |||||||| |||| ||| |||||||||||| |||| ||||    
T  18127753 ttttattttactaaggacctattttgaaaagagaaccgaacctcctatttcacagggacggccctg 18127688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 41096359 - 41096289
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  41096359 ttacgttttattttactaggggtctattttaaaaagagagccgagcctcctatttcacagggacggccctg 41096289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 19367269 - 19367174
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||||||||||       |||||||||||||||||||| | ||||||||||||||||| | ||||| |||||||||||| |||| ||||    
T  19367269 aatgaaatttaactacacaaaaaaattacgttttattttactaggagcctattttaaaaagagagtcaagcctcctatttcacagggacggccctg 19367174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 26151567 - 26151497
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| || |||| ||||    
T  26151567 ttacgttttattttactaggggcctattttaaaaagagagccaagcctcctatttcacggggacggccctg 26151497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 4856237 - 4856294
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  4856237 ttacgttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcac 4856294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 2064049 - 2064119
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||| ||  |||||||||||||||||  |||||| ||||||||||||||||| ||||    
T  2064049 ttacgttttattttactacggacctattttaaaaagagagttgagcctcctatttcacaggaacggccctg 2064119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 6530906 - 6530964
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcaca 159  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||||| ||||||||||    
T  6530906 ttacgttttattttaataggagcctattttaaaaagagagccgagcctcctatttcaca 6530964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 34061685 - 34061627
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcaca 159  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||| ||||||||||    
T  34061685 ttacgttttattttactaggggcttattttaaaaagagagctgagcctcctatttcaca 34061627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 13020666 - 13020719
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatt 154  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  13020666 ttacgttttattttactaggggcctattttaaaaagagagccgaacctcctatt 13020719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 7993851 - 7993932
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttca 157  Q
    ||||||||||||||||||       ||| |||||||||||||||| | ||||||||||||||||||||| ||| ||||||||    
T  7993851 aatgaaatttaactacacaaaaaaattatgttttattttactaggtgcctattttaaaaagagagccgaacctcctatttca 7993932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 18676129 - 18676069
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacagg 161  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||||  |||||||||||    
T  18676129 ttacgttttattttactaggggcctattttataaagagagctgagcctcttatttcacagg 18676069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 12269670 - 12269741
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctgg 172  Q
    ||||||||||||||| ||||   ||||||||||||||||| |||| || |||||||||||| ||||||||||    
T  12269670 ttacgttttattttaataggaacctattttaaaaagagagtcgagtctactatttcacagggacggtcctgg 12269741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 45619220 - 45619291
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctgg 172  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||  |||||||| || |||| |||||    
T  45619220 ttacgttttattttactaagggcctattttaaaaagagagtcgagcctcgtatttcacggggacggccctgg 45619291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 25222569 - 25222639
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||||||| ||| |||||||| |||||| | ||||||||||||| || |||| ||||    
T  25222569 ttacgttttattttactaggggcctactttaaaaaaagagccaaaccttctatttcacggggacggccctg 25222639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 45042635 - 45042705
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||| ||||||||||||||||| |||||||  ||  ||||||||||| |||| ||||    
T  45042635 ttacgttttattttactatgggtctattttaaaaagtgagccgattctcatatttcacagggacggccctg 45042705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 1226080 - 1226017
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||  ||||| ||||||||||||||||| ||||||| |||||||| |||||||| ||||    
T  1226080 ttttatttta--aggggcctattttaaaaagagagtcgagcctcctatttcataggaacggccctg 1226017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 17117460 - 17117395
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||| | |||| |||||||||| |||||||||||||| |||||||| ||| |||| ||||    
T  17117460 ttttattttattgggggcctattttaaatagagagccgagcctcctatttcatagggacggccctg 17117395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 36481639 - 36481704
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    |||||||||||||||||||  | ||||||||||||||||||| | ||| |||| ||||||| ||||    
T  36481639 ttacgttttattttactagaagactattttaaaaagagagccaaacctcctatgtcacagggacgg 36481704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 42759575 - 42759518
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||||||||||||||||| ||  ||||||||||||||| || |||||| |||||||||    
T  42759575 ttacgttttattttactatggacctattttaaaaagagggctgagcctcctatttcac 42759518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 13997580 - 13997627
Alignment:
Q  124 ctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||| ||| |||||||| |||||||| |||||||||||||    
T  13997580 ctattttaaaaatagaaccgagcctcctatttcataggaacggtcctg 13997627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 38985523 - 38985464
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    |||||||||| | |||| |||||||||| ||||||||||||| ||||||||| ||| ||||    
T  38985523 ttttattttattgggggcctattttaaatagagagccgagcc-tctatttcatagggacgg 38985464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 3445777 - 3445847
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||    
T  3445777 ttacgttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacagggacggtcctg 3445847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 18420425 - 18420365
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacagg 161  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  18420425 ttacgttttattttactaggagactattttaaaaagagagccgagcctcctatttcacagg 18420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 13585550 - 13585620
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||| ||||    
T  13585550 ttacattttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacagggacggccctg 13585620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 44664423 - 44664353
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||| || ||||||    
T  44664423 ttacgttttattttactagggacctattttaaaaagagagccgagccacctatttcacagggacagtcctg 44664353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 7858329 - 7858382
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatt 154  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  7858329 ttacgttttattttactaggggcctattttaaaaagagagtcgagcctcctatt 7858382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 27074718 - 27074789
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctgg 172  Q
    |||||||||||||||||| ||  |||||||||||||| ||||||||||  ||||||||| | ||||||||||    
T  27074718 ttacgttttattttactatggacctattttaaaaagatagccgagcctcatatttcacaaggacggtcctgg 27074789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 42951614 - 42951556
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcaca 159  Q
    |||||||||||||||||||    ||||||||||||||||||||||||| ||||||||||    
T  42951614 ttacgttttattttactagtaacctattttaaaaagagagccgagcctcctatttcaca 42951556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 1004302 - 1004359
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||||||||||||||||| || ||||||||||||| |||| ||||||| |||||||||    
T  1004302 ttacgttttattttactatggatctattttaaaaaaagagtcgagcctcctatttcac 1004359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 43926145 - 43926088
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    ||||||||||||||||||  || ||||||||||||||||||||||| | |||||||||    
T  43926145 ttacgttttattttactaaaggcctattttaaaaagagagccgagcttcctatttcac 43926088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 18112369 - 18112426
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcaca 159  Q
    ||||||||||||||||||||   ||||||||||||||||||||| ||| ||||||||||    
T  18112369 ttacgttttattttactaggac-ctattttaaaaagagagccgaacctcctatttcaca 18112426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 43967887 - 43967817
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||||||| ||||| |||||||||||||||||| | ||||  |||||  |||||||||| ||||    
T  43967887 ttacgttttattttaatagggatctattttaaaaagagagtcaagccacctattgtacaggaacggccctg 43967817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 3471843 - 3471899
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttca 157  Q
    |||||||||| ||||||| | |  |||||||||||||||||||||||| ||||||||    
T  3471843 ttacgttttactttactaagagcttattttaaaaagagagccgagcctcctatttca 3471899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 34523769 - 34523709
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    |||||||||| | |||| |||||||||| |||||||||||||| |||||||| ||| ||||    
T  34523769 ttttattttattgggggcctattttaaatagagagccgagcctcctatttcatagggacgg 34523709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 3574910 - 3574850
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    ||||||||||||  ||  |||||||||| |||||| ||||||| |||||||| ||||||||    
T  3574910 ttttattttactgaggacctattttaaatagagagtcgagcctcctatttcataggaacgg 3574850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 33910309 - 33910379
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  33910309 ttacgttttattttactaggggcctattttaaaaagagagccgagcctcctatttcacagggacggccctg 33910379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 11672835 - 11672892
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||    
T  11672835 ttacgttttattttactaggggtctattttaaaaagagaaccgaacctccaatttcac 11672892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 4100205 - 4100261
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttca 157  Q
    ||||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||    
T  4100205 ttacgttttattttactagagatctattttaaaaagagagccgaacctcctatttca 4100261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 6379904 - 6379844
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacagg 161  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||||||  |||||||||||    
T  6379904 ttacgttttattttactatgggcctattttaaaaagtgagccgagcctcatatttcacagg 6379844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 29730904 - 29730845
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacg 165  Q
    |||||||||||| |||| ||||||||||||||||| ||||||| |||||||| |||||||    
T  29730904 ttttattttactgggggcctattttaaaaagagagtcgagcctcctatttcataggaacg 29730845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 29742043 - 29742102
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacg 165  Q
    |||||||||||| |||| ||||||||||||||||| ||||||| |||||||| |||||||    
T  29742043 ttttattttactgggggcctattttaaaaagagagtcgagcctcctatttcataggaacg 29742102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 42160942 - 42160871
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctgg 172  Q
    |||||||||||||||||| || |||||||||||||||||||  | ||| |||||||||||| |||| |||||    
T  42160942 ttacgttttattttactaaggatctattttaaaaagagagcataacctcctatttcacagggacggccctgg 42160871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 7636143 - 7636089
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctattt 155  Q
    |||||||||||| ||||||||| ||||||||||||||||| |||| |||||||||    
T  7636143 ttacgttttattctactaggggcctattttaaaaagagagacgagtcttctattt 7636089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 36796191 - 36796133
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcaca 159  Q
    |||| |||||||||||||||| ||||||||||||||||||| ||| || ||||||||||    
T  36796191 ttacattttattttactagggatctattttaaaaagagagctgagtctcctatttcaca 36796133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 12251104 - 12251031
Alignment:
Q  101 ttacgttttattttactaggggtctatttta-aaaagagagccgagccttctatttcacaggaacggtcctggc 173  Q
    ||||||||||||||||||| || |||||||| |||||| || ||||||| |||||||||||| |||| ||||||    
T  12251104 ttacgttttattttactagaggcctattttaaaaaagatagtcgagcctcctatttcacagggacggccctggc 12251031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 44893847 - 44893790
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    ||||||||||||||| || || |||||||||||||||||| ||||||| |||||||||    
T  44893847 ttacgttttattttattaaggatctattttaaaaagagagtcgagcctcctatttcac 44893790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 1366258 - 1366318
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    |||||||||| | ||| ||||||||||| ||||||||||||||||||||||| ||| ||||    
T  1366258 ttttattttattggggatctattttaaatagagagccgagccttctatttcatagggacgg 1366318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 18015400 - 18015359
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagcc 142  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  18015400 ttacgttttattttattaggggcctattttaaaaagagagcc 18015359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 44875974 - 44875909
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||| |||||  ||||||||||||||||| ||||||| |||||||| ||| |||| ||||    
T  44875974 ttttattttagtagggacctattttaaaaagagagtcgagcctcctatttcatagggacggccctg 44875909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 26282347 - 26282282
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||| | |||| |||||||||| || ||||||||||| |||||||| ||| |||| ||||    
T  26282347 ttttattttattgggggcctattttaaatagtgagccgagcctcctatttcatagggacggccctg 26282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 23256817 - 23256911
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||||||||||       |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  23256817 aatgaaatttaactacacaaaaaaattacgttttattttactagggc-ctattttaaaaagagagccgagcctcctatttcacaggaacagtcctg 23256911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 53011959 - 53012029
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  53011959 ttacgttttattttactatgagcctattttaaaaagagagccgagcctcctatttcacaggaacggccctg 53012029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 27632643 - 27632703
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacagg 161  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  27632643 ttacgttttattttactaggggcctattttaaaatgagagccgagcctcctatttcacagg 27632703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 29221442 - 29221378
Alignment:
Q  102 tacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||    
T  29221442 tacgttttattttactagaggcctattttaaaaagagagccgagcctcctatttcacagggacgg 29221378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 41038496 - 41038553
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  41038496 ttacattttattttactaggggcctattttaaaaagagagccgagcctcctatttcac 41038553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 11681557 - 11681504
Alignment:
Q  105 gttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  11681557 gttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcac 11681504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 11689836 - 11689783
Alignment:
Q  105 gttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  11689836 gttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcac 11689783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 19661600 - 19661682
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    ||||||||||||||||||       ||| |||||||||||||||| | |||||||||||||||||| |||||| |||||||||    
T  19661600 aatgaaatttaactacacaaaaaaattatgttttattttactaggagcctattttaaaaagagagcagagcctcctatttcac 19661682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 32130609 - 32130540
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcct 170  Q
    |||||||||||||||||| ||  |||||||||||  |||||||||||| |||||||||||| ||||||||    
T  32130609 ttacgttttattttactaaggacctattttaaaagaagagccgagcctcctatttcacagggacggtcct 32130540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 16887803 - 16887733
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||||||| || ||| ||||||||||| ||||| | |||||  |||||||||||||||||||||    
T  16887803 ttacgttttattttattaagggcctattttaaaaggagagtcaagcctcatatttcacaggaacggtcctg 16887733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 44478284 - 44478338
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctattt 155  Q
    ||||||||||||||||||  | |||||||||||||||||| ||| ||| ||||||    
T  44478284 ttacgttttattttactaaagatctattttaaaaagagagtcgaacctcctattt 44478338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 35653794 - 35653735
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    |||||||||||| |||  |||| ||||||| ||| ||||||||||||||||| ||||||||    
T  35653794 ttttattttactcgggc-ctatcttaaaaatagaaccgagccttctatttcataggaacgg 35653735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 6361011 - 6361078
Alignment:
Q  105 gttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctgg 172  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  6361011 gttttattttactagggacctattttaaaaagagagccgagccttctatttcacagggatggtcctgg 6361078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 2618572 - 2618655
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcaca 159  Q
    ||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  2618572 aatgaaatttaactacacaaaaaaattacgttttattttactaggggcctattttaaaaagagagccgaacctcctatttcaca 2618655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 3514668 - 3514608
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacagg 161  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||| ||||||||||||    
T  3514668 ttacgttttattttactaagggtctattttaaaaagagagttgagcctcctatttcacagg 3514608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 29401387 - 29401440
Alignment:
Q  105 gttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  29401387 gttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcac 29401440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 22503988 - 22504044
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttca 157  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||| ||||||||    
T  22503988 ttacgttttattttactgagggtctattttaaaaagagaaccgagcctcctatttca 22504044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 31258392 - 31258321
Alignment:
Q  101 ttacgttttattttactaggggtctatttt-aaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||| || |||| ||||    
T  31258392 ttacgttttattttactaggggcctgtttttaaaaagagagccgagcctcctatttcacggggacggccctg 31258321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 29149635 - 29149690
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttca 157  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||| |||||||||    
T  29149635 ttacgttttattttactagagacctattttaaaaagagagccgagcc-tctatttca 29149690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 12614531 - 12614464
Alignment:
Q  105 gttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctgg 172  Q
    |||||||||||||||  | ||||||||||||||||| ||| ||| |||||| ||| | ||||||||||    
T  12614531 gttttattttactagaagcctattttaaaaagagagtcgaacctcctattttacatggacggtcctgg 12614464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 29308282 - 29308231
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttca 157  Q
    |||||||||| | |||| |||||||||| |||||||||||||| ||||||||    
T  29308282 ttttattttattgggggcctattttaaatagagagccgagcctcctatttca 29308231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 28132549 - 28132484
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  28132549 ttttattttactaggggcctattttaaaaagagagccgagcctcctatttcacagggacggccctg 28132484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 52654967 - 52654877
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    ||||||||||||||||||       |||||||||||||||||||||  |||||||||||||||||  |||||| |||||||||||||||||    
T  52654967 aatgaaatttaactacacaaaaaaattacgttttattttactagggacctattttaaaaagagagttgagcctcctatttcacaggaacgg 52654877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 6715683 - 6715753
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| || |||| ||||    
T  6715683 ttacgttttattttactaaggatctattttaaaaagagagccgagcctcctatttcacggggacggccctg 6715753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 27110690 - 27110636
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctattt 155  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  27110690 ttacgttttattttactacgggtctattttaaaaagagagtcgagcctcctattt 27110636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 46791514 - 46791451
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||||| ||||    
T  46791514 ttacgttttattttactaggggcctatttt--aaagagagccgagcctcctatttcacagggacgg 46791451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 8364417 - 8364477
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacagg 161  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||| ||||||    
T  8364417 ttacgttttattttactatgggcctattttaaaaagagagtcgagcctcctattccacagg 8364477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 29387593 - 29387498
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||||||||||       |||  |||||||||||||  | |||||||||||||||||| |||||||  ||||||||||||||| |||||    
T  29387593 aatgaaatttaactacacaaaaaaattatattttattttactaaagatctattttaaaaagagagtcgagcctcatatttcacaggaacgttcctg 29387498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 13401702 - 13401775
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctggct 174  Q
    |||| ||||||||||||| ||  ||||||||||||||||| ||||||| |||||| ||||| |||| |||||||    
T  13401702 ttacattttattttactaaggacctattttaaaaagagagtcgagcctcctattttacagggacggccctggct 13401775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 23164387 - 23164330
Alignment:
Q  105 gttttattttactaggggtctattttaaaaagagagccgagccttctatttcacagga 162  Q
    ||||||||||||||| || |||||||||||||||||| | |||| |||||||||||||    
T  23164387 gttttattttactagaggcctattttaaaaagagagctgtgcctcctatttcacagga 23164330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 25598902 - 25598837
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    ||||||||||||||||||  |  ||||||||||||||||||||||||| |||||| | ||||||||    
T  25598902 ttacgttttattttactaaagacctattttaaaaagagagccgagcctcctattttataggaacgg 25598837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 51939374 - 51939309
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    ||||||| ||||||| |||| | ||||||||||||||||| ||||||| |||||||||||| ||||    
T  51939374 ttacgttatattttaataggagcctattttaaaaagagagtcgagcctactatttcacagggacgg 51939309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 27729590 - 27729530
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacagg 161  Q
    |||| ||||||||||||||||  |||||||||||||| |||||| ||| ||||||||||||    
T  27729590 ttacattttattttactagggacctattttaaaaagacagccgaacctcctatttcacagg 27729530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 51147200 - 51147252
Alignment:
Q  119 ggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||||||||| ||| |||||||| |||||||| |||||||| ||||    
T  51147200 ggggtctattttaaaaatagaaccgagcctcctatttcataggaacggccctg 51147252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 1649656 - 1649597
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacg 165  Q
    |||||||||||| |||  |||||||||| |||||||||||||| | |||||| |||||||    
T  1649656 ttttattttactggggaactattttaaatagagagccgagcctcccatttcataggaacg 1649597  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 40151931 - 40151888
Alignment:
Q  122 gtctattttaaaaagagagccgagccttctatttcacaggaacg 165  Q
    ||||||||||||||||||| ||||||| |||||||| |||||||    
T  40151931 gtctattttaaaaagagagtcgagcctcctatttcataggaacg 40151888  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 43905668 - 43905617
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttca 157  Q
    |||||||||| | ||||||||||||||| |||||| ||||||| ||||||||    
T  43905668 ttttattttattgggggtctattttaaatagagagtcgagcctcctatttca 43905617  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 21784624 - 21784535
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    ||||||||||||||||||       |||||||||||||||||| |   ||||||||||||||||| ||| ||| |||||||| ||| ||||    
T  21784624 aatgaaatttaactacacaaaaaaattacgttttattttactatgac-ctattttaaaaagagagtcgaacctcctatttcagagggacgg 21784535  T

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Target: scaffold0181 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 16953 - 16896
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||    
T  16953 ttacgttttattttattaggggcctattttaaaaagagagccgagcctcctatttcac 16896  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 13474875 - 13474945
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||| || |||| ||||    
T  13474875 ttacgttttattttactagaggcctattttaaaaagagagtcgagcctcctatttcacggggacggccctg 13474945  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 37047027 - 37047097
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||| || |||| ||||    
T  37047027 ttacgttttattttactaagggcctattttaaaaagagagccgaacctcctatttcacggggacggccctg 37047097  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 931618 - 931677
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacg 165  Q
    |||| ||||||||| |||||||||||||||||||||||| ||| |||||||| |||||||    
T  931618 ttttgttttactagaggtctattttaaaaagagagccgaacctcctatttcataggaacg 931677  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 12661552 - 12661617
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    ||||||||||||||||||  |  ||||||||||||||||||||||||| | |||||||||| ||||    
T  12661552 ttacgttttattttactaaagacctattttaaaaagagagccgagcctcccatttcacagggacgg 12661617  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 13424084 - 13424174
Alignment:
Q  76 aatgaaatttaactacacnnnnnnnttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    ||||||||||||||||||       |||  |||||| ||||||| |  ||||||||||||||||||||||||| |||||||||||| ||||    
T  13424084 aatgaaatttaactacacaaaaaaattagtttttatcttactagagacctattttaaaaagagagccgagcctcctatttcacagggacgg 13424174  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 26377587 - 26377538
Alignment:
Q  109 tattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  26377587 tattttactaggggcctattttaaaaagagagtcgagcctcctatttcac 26377538  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 36718448 - 36718389
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacag 160  Q
    |||||||||||||||||| || ||||||||||||||||||  |||||| |||||| ||||    
T  36718448 ttacgttttattttactatggatctattttaaaaagagagttgagcctcctattttacag 36718389  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 7390215 - 7390156
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    |||||||||| |||||  |||||||||||| ||| ||||||||||||||||| ||||||||    
T  7390215 ttttattttattaggga-ctattttaaaaatagaaccgagccttctatttcataggaacgg 7390156  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 3349526 - 3349479
Alignment:
Q  124 ctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    |||||||||| |||||||||||||| |||||||| ||| |||||||||    
T  3349526 ctattttaaatagagagccgagcctcctatttcatagggacggtcctg 3349479  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 43511870 - 43511921
Alignment:
Q  106 ttttattttactaggggtctattttaaaaagagagccgagccttctatttca 157  Q
    |||||||||| | |||| |||||||||| |||||||||||||| ||||||||    
T  43511870 ttttattttattgggggcctattttaaatagagagccgagcctcctatttca 43511921  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 41612990 - 41613032
Alignment:
Q  124 ctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    |||||||||||||||||| |||||| |||||||| ||||||||    
T  41612990 ctattttaaaaagagagcagagcctcctatttcataggaacgg 41613032  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 13656456 - 13656512
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||||||||||||||||| |   ||||||||||||||||||||| ||| |||||||||    
T  13656456 ttacgttttattttactatgac-ctattttaaaaagagagccgaacctcctatttcac 13656512  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 20976249 - 20976286
Alignment:
Q  124 ctattttaaaaagagagccgagccttctatttcacagg 161  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  20976249 ctattttaaatagagagccgagcctcctatttcacagg 20976286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 26312231 - 26312288
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    ||||||||||||||||||   | ||||||||||| ||||| ||||||| |||||||||    
T  26312231 ttacgttttattttactattagcctattttaaaatgagagtcgagcctcctatttcac 26312288  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 10591074 - 10591030
Alignment:
Q  122 gtctattttaaaaagagagccgagccttctatttcacaggaacgg 166  Q
    |||||||||||| |||||||||||||| |||||||| ||| ||||    
T  10591074 gtctattttaaatagagagccgagcctcctatttcatagggacgg 10591030  T

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Target: scaffold0564 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 1306 - 1376
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcacaggaacggtcctg 171  Q
    ||||||||||||||||||||    |||||||||||||||||||||||| ||||||||| || |||| ||||    
T  1306 ttacgttttattttactaggaacttattttaaaaagagagccgagcctcctatttcacggggacggccctg 1376  T

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Target: scaffold0126 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 16955 - 17012
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    ||||||| |||||||||||||| |||||||||||||||||  |||||| |||||||||    
T  16955 ttacgttatattttactaggggcctattttaaaaagagagttgagcctcctatttcac 17012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 45995 - 45938
Alignment:
Q  101 ttacgttttattttactaggggtctattttaaaaagagagccgagccttctatttcac 158  Q
    |||| |||||||||||||||||  |||||||||||||||| ||||||| |||||||||    
T  45995 ttacattttattttactaggggcttattttaaaaagagagtcgagcctcctatttcac 45938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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