View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13101_low_13 (Length: 238)
Name: NF13101_low_13
Description: NF13101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13101_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 29236123 - 29236330
Alignment:
| Q |
31 |
aggcaattaatagacttttggggaacttacttagaagctttgtgggaaataatttgaggcaatgggatcttattcttgcacatattgaatttgcctataa |
130 |
Q |
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| T |
29236123 |
aggcaattaatagacttttggggaacttacttagaagctttgtgggaaataatatgaggcaatgggatcttattcttgcacatattgaatttgcctataa |
29236222 |
T |
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| Q |
131 |
taactctaccaatcaagctaccgggaaatgtccatttgaggtggtttatggcatgcgtcctcttagcccactggacttaactccatcacttagcactcaa |
230 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
29236223 |
taactccaccaatcaagctaccgggaaatgtccatttgaggtggtttatggcatgcgtcctctcagcccactggacttaactccatcacctagcactcaa |
29236322 |
T |
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| Q |
231 |
caatatat |
238 |
Q |
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|||||||| |
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| T |
29236323 |
caatatat |
29236330 |
T |
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Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 33 - 229
Target Start/End: Original strand, 45166284 - 45166480
Alignment:
| Q |
33 |
gcaattaatagacttttggggaacttacttagaagctttgtgggaaataatttgaggcaatgggatcttattcttgcacatattgaatttgcctataata |
132 |
Q |
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| T |
45166284 |
gcaattaatagacttctggggaacttactaagaagttttgtgggaaagaatttgaggcaatgggatcttatccttgcacatattgagtttgcctataata |
45166383 |
T |
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| Q |
133 |
actctaccaatcaagctaccgggaaatgtccatttgaggtggtttatggcatgcgtcctcttagcccactggacttaactccatcacttagcactca |
229 |
Q |
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| T |
45166384 |
actccgccaatcaagctaccgggaagtgtccatttgaggtggtttatggcttgcgtcctcttagcccactggatttaactccatcacctagcactca |
45166480 |
T |
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Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 8534828 - 8535024
Alignment:
| Q |
31 |
aggcaattaatagacttttggggaacttacttagaagctttgtgggaaataatttgaggcaatgggatcttattcttgcacatattgaatttgcctataa |
130 |
Q |
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|||||||||||| ||||||||| ||||||||||||||| ||| | ||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
8534828 |
aggcaattaata-acttttgggtaacttacttagaagcattgatgtaaataatttgaggaaatggaatcttatccttgcacatattgaattttcctataa |
8534926 |
T |
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| Q |
131 |
taactctaccaatcaagctaccgggaaatgtccatttgaggtggtttatggcatgcgtcctcttagcccactggacttaactccatcacttagcactc |
228 |
Q |
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| T |
8534927 |
taactctaggaaacaagctaccgggaagtttccatttgaggtggtttatggcatgcgtcctcttagcccattggacttaactctatcacctagcactc |
8535024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 20380700 - 20380737
Alignment:
| Q |
159 |
tgtccatttgaggtggtttatggcatgcgtcctcttag |
196 |
Q |
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| T |
20380700 |
tgtccatttgaggtggtttatggcatgtgtccccttag |
20380737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 2404721 - 2404601
Alignment:
| Q |
109 |
cacatattgaatttgcctataataactctaccaatcaagctaccgggaaatgtccatttgaggtggtttatggcatgcgtcctcttagcccactggactt |
208 |
Q |
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|||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| || |
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| T |
2404721 |
cacagattgagtttgcctataataactccaccaatcaagctaccgggaagtgtccatttgaggtggtttatggcttgcgtcctcttagcccattggattt |
2404622 |
T |
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| Q |
209 |
aactccatcacttagcactca |
229 |
Q |
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| T |
2404621 |
aactccatcacctagcactca |
2404601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 2405965 - 2405881
Alignment:
| Q |
28 |
cataggcaattaatagacttttggggaacttacttagaagctttgtgggaaataatttgaggcaatgggatcttattcttgcaca |
112 |
Q |
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| T |
2405965 |
cataagcaattaatagacttctagggaacttacttagaagttttttgggaaagaatttgaggtaatgggatcttatccttgcaca |
2405881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 25481590 - 25481506
Alignment:
| Q |
90 |
caatgggatcttattcttgcacatattgaatttgcctataataactctaccaatcaagctaccgggaaatgtccatttgaggtgg |
174 |
Q |
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| T |
25481590 |
caatgggatcttatttttgcacaagttgaatttgcatacaataactcaactaatcaagctactggaaaatgtccttttgaagtgg |
25481506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 13166282 - 13166360
Alignment:
| Q |
94 |
gggatcttattcttgcacatattgaatttgcctataataactctaccaatcaagctaccgggaaatgtccatttgaggt |
172 |
Q |
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| T |
13166282 |
gggatcttatattggcacaagttgaatttgcttacaataattcaactaatcaagctaccggaaaatgtccttttgaggt |
13166360 |
T |
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