View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13101_low_2 (Length: 712)

Name: NF13101_low_2
Description: NF13101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13101_low_2
NF13101_low_2
[»] chr2 (1 HSPs)
chr2 (15-694)||(18573407-18574075)


Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 15 - 694
Target Start/End: Original strand, 18573407 - 18574075
Alignment:
Q  15 catagggcacatatattagtcaatggtacgatacactatgataaatcatgtcttagattttagcgtgaatttaattggtacggactgtcagtttgatatt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||||||| |||    
T  18573407 catagggcacatatattagtcaatggtacgatacactatgataaatc--gtcttagattttagcgtgaatttaattggtacgcactgtgagtttgaaatt 18573504  T
Q  115 tgcattacgattttataaaaattaaactattctggttttgcataagtaacatacccgtagtaccatttgaattctccatcaccataaacaccaaagagct 214  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18573505 tgcattacgattttataaaaattaaactattctggttttgcgtaagtaacatacccgtagtaccatttgaattctccatcaccataaacaccaaagagct 18573604  T
Q  215 ccaatatcattgctaagaatgcacaaacagtcttcaggatcatctgcgctatatctaagtgaaattaggcttatatagtcactttaaagctacaatgaac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18573605 ccaatatcattgctaagaatgcacaaacagtcttcaggatcatctgcgctatatctaagtgaaattaggcttatatagtcactttaaagctacaatgaac 18573704  T
Q  315 ccttcataagaaaattttaacgcctacatattggacgagaccaaatttctcaatagcaagaagatcttttccaagcctgcatggatgccaaaagaagttg 414  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18573705 cgttcataagaaaattttaacgcctacatattggacgagaccaaatttctcaatagcaagaagatcttttccaagcctgcatggatgccaaaagaagttg 18573804  T
Q  415 caaaatgatctctgttccgtgccattattctcgtcagaatcatgcaataagggtttttcgaggtgttcttcagattcatcttcaagtagttctacaaccn 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18573805 caaaatgatctctgttccgtgccattattctcgtcagaatcatgcaataagggtttttcgaggtgttcttcagattcatcttcaagtagttctacaacct 18573904  T
Q  515 nnnnnncaccacctaacagttttcatttaaagaatagaattatgtgaaattttttcaaatctccgatatttagcatcaacattagctatattcgtatgac 614  Q
          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18573905 ttctttcaccccctaacagttttcatttaaagaatagaattatgtgaaattttttcaaatctctgatatttagcatcaacattagctatattcgtatgac 18574004  T
Q  615 atcgaggtcacagactcaaagtatgcaacgtacctagacaggaaatgagatatcttccgaatgaatatagagcaaaggct 694  Q
    ||| |||||         |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18574005 atcaaggtc---------aagtatgcaacgtacctagacaggaaatgagatatcttccaaatgaatatagagcaaaggct 18574075  T

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