View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13101_low_5 (Length: 387)
Name: NF13101_low_5
Description: NF13101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13101_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 36523095 - 36522742
Alignment:
| Q |
18 |
ataaaatctacaaaacttctatatgaatttagtaatttacctctgagaaaggactaaccaatggatctaacttttgtggtcccaacaacactgatctaca |
117 |
Q |
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| T |
36523095 |
ataaaatctacaaaacttctatatgaatttagtaatttacctctgagaaaggactaaccaatggatctaacttttgtggtcccaacaacactgatctaca |
36522996 |
T |
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| Q |
118 |
taacctctcaactttgtctctttccttattgcttttcattgattccttcttgatccttgaaggagttaaatcattgatttcccaaagtgtagcagcaagt |
217 |
Q |
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| T |
36522995 |
taacctctcaactttgtctctttccttattgcttttcattgattccttcttgatccttgaaggagttaaatcattgatttcccaaagtgtagcagcaagt |
36522896 |
T |
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| Q |
218 |
tttctagcagacacagaaatttctttcttctctttgaagggtaatccagtacgtgaagaatgcaaagctgtgtttttcatagcatgatgatgatgagttg |
317 |
Q |
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| T |
36522895 |
tttctagcagacacagaaatttctttcttctctttgaagggtaatccagtacgtgaagaatgcaaagctgtctttttcatagcatggtgatgatgagttg |
36522796 |
T |
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| Q |
318 |
ccatagaaggtgactttgagcttgttttccacataggtgctggtgtattgtacc |
371 |
Q |
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| T |
36522795 |
ccatagaaggtgactttgagcttgttttccacataggtgctggtgtattgtacc |
36522742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 18972960 - 18973037
Alignment:
| Q |
159 |
attccttcttgatccttgaaggagttaaatcattgatttcccaaagtgtagcagcaagttttctagcagacacagaaa |
236 |
Q |
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| T |
18972960 |
attccttcttgacccttgaaggatgcaaatcattgatttcccacaaagaagcagcaagttttctagctgaaacagaaa |
18973037 |
T |
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