View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13101_low_7 (Length: 307)

Name: NF13101_low_7
Description: NF13101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13101_low_7
NF13101_low_7
[»] chr3 (25 HSPs)
chr3 (19-288)||(33309889-33310158)
chr3 (65-166)||(54141374-54141475)
chr3 (78-173)||(33309639-33309736)
chr3 (78-166)||(16024807-16024895)
chr3 (70-161)||(1741971-1742062)
chr3 (73-170)||(16024515-16024612)
chr3 (73-165)||(9690190-9690282)
chr3 (73-165)||(31989802-31989894)
chr3 (75-162)||(49745715-49745802)
chr3 (65-130)||(5411844-5411909)
chr3 (76-165)||(25693295-25693384)
chr3 (99-163)||(43485264-43485329)
chr3 (99-162)||(45472210-45472273)
chr3 (113-163)||(28260028-28260078)
chr3 (107-165)||(40966280-40966337)
chr3 (65-162)||(49278367-49278463)
chr3 (65-162)||(51107679-51107776)
chr3 (77-141)||(25695046-25695110)
chr3 (73-157)||(31993871-31993955)
chr3 (77-161)||(34062794-34062878)
chr3 (82-166)||(25370307-25370391)
chr3 (99-164)||(49278663-49278728)
chr3 (76-165)||(54394306-54394395)
chr3 (86-138)||(45471899-45471951)
chr3 (73-141)||(52274878-52274946)
[»] chr7 (14 HSPs)
chr7 (65-162)||(15998799-15998896)
chr7 (65-162)||(14584929-14585026)
chr7 (80-166)||(30219031-30219117)
chr7 (73-163)||(2145925-2146015)
chr7 (65-161)||(14585210-14585306)
chr7 (77-167)||(18503563-18503653)
chr7 (78-163)||(25245012-25245097)
chr7 (78-163)||(30218749-30218834)
chr7 (65-132)||(15999080-15999147)
chr7 (80-126)||(26241524-26241570)
chr7 (76-165)||(33005133-33005223)
chr7 (73-167)||(33998569-33998663)
chr7 (84-161)||(39187701-39187778)
chr7 (80-128)||(33998854-33998902)
[»] chr5 (17 HSPs)
chr5 (75-162)||(26032249-26032336)
chr5 (75-164)||(38445966-38446055)
chr5 (73-165)||(40972117-40972209)
chr5 (60-167)||(18258028-18258135)
chr5 (70-165)||(21034621-21034716)
chr5 (77-161)||(7630619-7630703)
chr5 (65-140)||(36599845-36599920)
chr5 (98-168)||(36060759-36060829)
chr5 (77-167)||(41863732-41863822)
chr5 (84-165)||(32892431-32892512)
chr5 (81-128)||(40971875-40971922)
chr5 (75-161)||(38445670-38445756)
chr5 (80-141)||(756924-756985)
chr5 (73-158)||(30856367-30856452)
chr5 (105-162)||(2301832-2301889)
chr5 (76-129)||(17436473-17436526)
chr5 (98-162)||(38142372-38142437)
[»] chr4 (19 HSPs)
chr4 (73-164)||(17947284-17947375)
chr4 (77-163)||(51203221-51203307)
chr4 (77-161)||(11692153-11692237)
chr4 (76-162)||(5521500-5521590)
chr4 (74-167)||(52131904-52131997)
chr4 (80-156)||(24789658-24789734)
chr4 (80-156)||(24818525-24818601)
chr4 (77-164)||(31792623-31792710)
chr4 (81-163)||(44340962-44341044)
chr4 (81-162)||(33414298-33414378)
chr4 (105-161)||(38834058-38834114)
chr4 (88-163)||(2478935-2479010)
chr4 (73-163)||(4120127-4120216)
chr4 (85-161)||(15186857-15186933)
chr4 (19-65)||(15187101-15187147)
chr4 (80-166)||(41823536-41823622)
chr4 (80-133)||(5521240-5521293)
chr4 (85-162)||(36620916-36620993)
chr4 (99-163)||(38851974-38852038)
[»] chr2 (26 HSPs)
chr2 (76-167)||(35665323-35665414)
chr2 (73-166)||(7876157-7876250)
chr2 (88-163)||(17642612-17642687)
chr2 (73-161)||(12496852-12496939)
chr2 (65-160)||(7693570-7693665)
chr2 (76-161)||(28191442-28191527)
chr2 (77-164)||(12926506-12926593)
chr2 (83-164)||(578206-578291)
chr2 (75-165)||(24895732-24895822)
chr2 (74-121)||(35665584-35665631)
chr2 (97-164)||(40948869-40948936)
chr2 (69-164)||(43281564-43281658)
chr2 (77-163)||(578463-578548)
chr2 (60-158)||(654222-654320)
chr2 (100-166)||(35652112-35652178)
chr2 (81-166)||(10439507-10439591)
chr2 (77-133)||(1944172-1944228)
chr2 (76-164)||(20140822-20140910)
chr2 (76-127)||(25954749-25954800)
chr2 (60-94)||(25954507-25954541)
chr2 (75-169)||(28191733-28191826)
chr2 (77-169)||(7876443-7876533)
chr2 (75-136)||(20141064-20141125)
chr2 (99-164)||(27002997-27003062)
chr2 (99-164)||(34196848-34196913)
chr2 (75-128)||(37149211-37149264)
[»] chr1 (17 HSPs)
chr1 (73-169)||(33261970-33262066)
chr1 (73-169)||(33282129-33282225)
chr1 (76-167)||(14397986-14398077)
chr1 (73-162)||(1691537-1691626)
chr1 (76-166)||(27086249-27086339)
chr1 (70-166)||(1691294-1691390)
chr1 (60-164)||(33261690-33261793)
chr1 (60-164)||(33281849-33281952)
chr1 (75-128)||(10840483-10840535)
chr1 (60-136)||(21722927-21723003)
chr1 (87-162)||(14520839-14520913)
chr1 (76-121)||(27085997-27086043)
chr1 (98-144)||(42053665-42053711)
chr1 (113-163)||(46644548-46644598)
chr1 (73-162)||(9117470-9117558)
chr1 (83-163)||(7435383-7435462)
chr1 (73-161)||(14398273-14398361)
[»] chr6 (6 HSPs)
chr6 (76-162)||(3014543-3014630)
chr6 (77-167)||(12754021-12754111)
chr6 (82-159)||(1112024-1112101)
chr6 (72-121)||(3014314-3014363)
chr6 (76-161)||(4096768-4096853)
chr6 (76-136)||(353299-353359)
[»] chr8 (15 HSPs)
chr8 (76-166)||(23757284-23757374)
chr8 (75-163)||(15249582-15249670)
chr8 (73-164)||(23757574-23757666)
chr8 (99-163)||(33657592-33657656)
chr8 (75-173)||(158693-158792)
chr8 (73-136)||(158962-159025)
chr8 (80-163)||(22210238-22210321)
chr8 (85-166)||(36129128-36129209)
chr8 (82-165)||(33757871-33757954)
chr8 (71-128)||(36128635-36128692)
chr8 (98-162)||(5986721-5986785)
chr8 (73-169)||(13515626-13515721)
chr8 (73-169)||(13605159-13605254)
chr8 (76-128)||(22209994-22210046)
chr8 (73-165)||(33758114-33758206)
[»] scaffold0939 (1 HSPs)
scaffold0939 (76-165)||(707-796)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 33309889 - 33310158
Alignment:
Q  19 caacctttgtatgttcatattattatgttcaagaaatttccaaaacaaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaa 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33309889 caacctttgtatgtccatattattatgttcaagaaatttccaaaacaaatgaaattttttgtgaggatgaaaacaccccgttttattttttagggactaa 33309988  T
Q  119 aataaaaattcgctatatatttagggaagaaaaacttatttaaccctatttaatagtttgataaagataaaaatataacattttcttatatggaaagaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33309989 aataaaaattcgctatatatttagggaagaaaaacttatttaaccctatttaataatttgataaagataaaaatataacattttcttatatggaaagaga 33310088  T
Q  219 cattcgagaggaatgttagcatcaagataatgctgcctagtaggcagcattgaactagaagagtggagtg 288  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33310089 cattcgagaggaatgttagcatcaagataatgctgcctactaggcagcattgaactagaagagtggagtg 33310158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 54141475 - 54141374
Alignment:
Q  65 aaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    |||||||||||||||||||||||||||||| |  |||||||||||| | |||| ||| |||||||||||||| |||| ||||||||||||||||||||||    
T  54141475 aaatgaaattttttgtgaggatgaaaacattcaattttattttttaagaactacaatcaaaattcgctatatttttatggaagaaaaacttatttaaccc 54141376  T
Q  165 ta 166  Q
    ||    
T  54141375 ta 54141374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 33309736 - 33309639
Alignment:
Q  78 tgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgc-tatatatttagggaag-aaaaacttatttaaccctatttaata 173  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||||| | |||||||| |||||||||||| ||||    
T  33309736 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcacttatatttttagggacgaaaaaacttctttaaccctattaaata 33309639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 16024807 - 16024895
Alignment:
Q  78 tgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacccta 166  Q
    |||||||||||||||||| | ||||||||||||||||||||||| |||||| | ||||| | |||||| ||| ||||||||||||||||    
T  16024807 tgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggacgaataacttatttaacccta 16024895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 1742062 - 1741971
Alignment:
Q  70 aaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    |||||||||||||||||||||||||| | |||||||||||||||| |||||| |||||| | ||||| | |||||| ||||| |||||||||    
T  1742062 aaattttttgtgaggatgaaaacatctcattttattttttagggattaaaatcaaaatttgatatatttatagggatgaaaatcttatttaa 1741971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 16024612 - 16024515
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctattta 170  Q
    |||||||||| ||||||||||| | |||| |||||||||||| |||||| |||||||||||||| | | | || ||||||||||||||||||| ||||    
T  16024612 ttttttgtgaagatgaaaacattcagtttaattttttagggattaaaatcaaaattcgctatatttattgagacgaaaaacttatttaacccttttta 16024515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 9690282 - 9690190
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    |||||||||||||||||||||| |  ||||||||||||||||| ||||| |||||||| | ||| |||  ||| |||||||||||||||||||    
T  9690282 ttttttgtgaggatgaaaacattcatttttattttttagggacaaaaattaaaattcgttgtattttttaggatgaaaaacttatttaaccct 9690190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 31989894 - 31989802
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    |||||||||||||||||||| | |  ||| ||||||||||||||||||| |||||| | ||||| | || ||| |||||||||||||||||||    
T  31989894 ttttttgtgaggatgaaaacgttcaatttaattttttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaaccct 31989802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 49745802 - 49745715
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    ||||||||| ||||||||||||||||||||||||||   |||||||| |||||||  ||||| |||| | || |||||||||||||||    
T  49745802 ttttgtgagaatgaaaacatcccgttttattttttaaatactaaaatcaaaattcattatatttttaagcaacaaaaacttatttaac 49745715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 5411909 - 5411844
Alignment:
Q  65 aaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcg 130  Q
    ||||||||  ||| |||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  5411909 aaatgaaaaatttagtgaggatgaaaacatccagttttattttataaggactaaaataaaaattcg 5411844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 25693384 - 25693295
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    |||||||||||||||||| | ||||||||||| || |||| ||||| |||||  | ||||  | |||||| |||||||||||||||||||    
T  25693384 tttgtgaggatgaaaacacctcgttttattttataaggaccaaaatcaaaatatgttataattatagggacgaaaaacttatttaaccct 25693295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 43485329 - 43485264
Alignment:
Q  99 ttttattttttagggactaaaataaaaattcgctatat-atttagggaagaaaaacttatttaacc 163  Q
    |||||||||| | ||| |||||| |||||||||||||| || ||||||||||||||||||||||||    
T  43485329 ttttatttttgaaggattaaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 43485264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 45472210 - 45472273
Alignment:
Q  99 ttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    |||||||||||| |||||||||| ||||||| ||| || ||||||||  |||||||||||||||    
T  45472210 ttttattttttaaggactaaaattaaaattcactaaatttttagggactaaaaacttatttaac 45472273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 28260028 - 28260078
Alignment:
Q  113 gactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    ||||||||| |||||| ||||||| |||||||| |||||||||||||||||    
T  28260028 gactaaaatcaaaatttgctatatttttagggacgaaaaacttatttaacc 28260078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 40966337 - 40966280
Alignment:
Q  107 tttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    ||||||||||||||||| |||||||||||| |||| ||| | |||||||||||||||||    
T  40966337 tttagggactaaaataagaattcgctatattttta-ggatggaaaacttatttaaccct 40966280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 49278463 - 49278367
Alignment:
Q  65 aaatgaaattttttgtgaggatgaaaa-catcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    |||| |||||||||||||| | ||||| ||| | ||||  |||||||||||||||||| |||||| ||||| | |||||||| ||||||||||||||||    
T  49278463 aaataaaattttttgtgagaacgaaaaacattctgtttagttttttagggactaaaat-aaaatttgctat-tttttagggacgaaaaacttatttaac 49278367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 51107776 - 51107679
Alignment:
Q  65 aaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    |||| |||||||||||||||| ||||||||   | || ||||||||| ||||||||| |||||| | ||||| |||| |||  || ||||||||||||    
T  51107776 aaataaaattttttgtgaggacgaaaacattttgattaattttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 51107679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 25695046 - 25695110
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatattta 141  Q
    ||||||| ||||||||||   |||| |||||||||| |||||||| |||||||||||||| ||||    
T  25695046 ttgtgagaatgaaaacattttgtttaattttttaggcactaaaatcaaaattcgctatattttta 25695110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 31993871 - 31993955
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttat 157  Q
    |||||| | |||||||||| ||| ||||||||||| || ||| |||||| |||||||||||||  |||| |||  ||||||||||    
T  31993871 tttttttttaggatgaaaatatctcgttttattttctatggaataaaattaaaattcgctataattttatggatcaaaaacttat 31993955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 34062794 - 34062878
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    ||||||||||||||| |||  ||||||||||||||||| |||||| |||  ||||||| | |||| |||  ||||||||| ||||    
T  34062794 ttgtgaggatgaaaatatcatgttttattttttagggattaaaatcaaacctcgctatgtttttatggaccaaaaacttacttaa 34062878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 25370391 - 25370307
Alignment:
Q  82 aggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttag-ggaagaaaaacttatttaacccta 166  Q
    ||||||||| || ||| |||||||||||||||||| |||| |||||||| ||||| ||| |   || |||||||||||||||||||    
T  25370391 aggatgaaaccaacccattttattttttagggact-aaatcaaaattcgttatattttttgaaaaaaaaaaacttatttaacccta 25370307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 49278663 - 49278728
Alignment:
Q  99 ttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    |||||||||  | |||||||||| |||||  | ||||||| |||||| ||||||||||||||||||    
T  49278663 ttttattttacaaggactaaaatcaaaatcagttatatatatagggacgaaaaacttatttaaccc 49278728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 54394395 - 54394306
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    |||||||  |||||||||| |  ||| ||||||||||||||||||| |||||||  ||||  | || | | |||||||||||||||||||    
T  54394395 tttgtgaatatgaaaacattcaatttaattttttagggactaaaatcaaaattctttatagttataagaacgaaaaacttatttaaccct 54394306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 45471951 - 45471899
Alignment:
Q  86 tgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatat 138  Q
    |||||||||||| ||||||||||||   ||||| || ||||||||||||||||    
T  45471951 tgaaaacatcccattttattttttaaaaactaatatcaaaattcgctatatat 45471899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 52274946 - 52274878
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatattta 141  Q
    ||||||||||||| ||||||||   |||| |||||||| | |||||||| ||||||| |||||| ||||    
T  52274946 ttttttgtgaggaagaaaacatttagtttaattttttaagaactaaaattaaaattcactatattttta 52274878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 15998896 - 15998799
Alignment:
Q  65 aaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||  |||||| ||||| || |||||| |||||||||    
T  15998896 aaataaaattttttgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttactatatttttagagacgaaaaaattatttaac 15998799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 14585026 - 14584929
Alignment:
Q  65 aaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||   ||||| ||||| || |||||| |||||||||    
T  14585026 aaataaaattttttgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttattatatttttagagacgaaaaaattatttaac 14584929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 30219031 - 30219117
Alignment:
Q  80 tgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacccta 166  Q
    ||||||||||||||| | ||||  |||| ||||||||||||| |||||||||||||| | || ||| ||||||||||||||||||||    
T  30219031 tgaggatgaaaacattcagtttagttttgtagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaacccta 30219117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 2146015 - 2145925
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    |||||||||||||| ||||||| |  ||| |||||||| ||| ||||||||||||||||||||| | ||  || |||||||||||||||||    
T  2146015 ttttttgtgaggataaaaacattcaatttaattttttaaggattaaaataaaaattcgctatatttataaagacgaaaaacttatttaacc 2145925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 14585210 - 14585306
Alignment:
Q  65 aaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    ||||||||||||||||||| |||||||||  | ||||||||||||||||| |||||| ||| |||||| ||| || ||  |  ||||||||||||||    
T  14585210 aaatgaaattttttgtgagaatgaaaacaatcagttttattttttagggattaaaatcaaagttcgctgtattttcagaaacaaaaaacttatttaa 14585306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 18503653 - 18503563
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctat 167  Q
    ||||||||||||||||||| | ||||||||||||||||  ||||| |||||| | ||||| | || ||| |||||||||| |||| |||||    
T  18503653 ttgtgaggatgaaaacatctcattttattttttagggataaaaatcaaaatttgatatatttataaggacgaaaaacttagttaaacctat 18503563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 25245097 - 25245012
Alignment:
Q  78 tgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    ||||| |||||||||||  | |||||| |||||||||  ||||| |||||||||||| | | |||||| |||||||||||||||||    
T  25245097 tgtgaagatgaaaacatttcattttatattttagggatcaaaatcaaaattcgctatttttatagggatgaaaaacttatttaacc 25245012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 30218834 - 30218749
Alignment:
Q  78 tgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    ||||||||||||||||| | |||| ||||| |||| | |||||| |||||||| ||||| | || ||| |||||||||||||||||    
T  30218834 tgtgaggatgaaaacattcagtttaattttataggaattaaaatcaaaattcgttatatttatatggacgaaaaacttatttaacc 30218749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 15999080 - 15999147
Alignment:
Q  65 aaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgct 132  Q
    |||| |||||||||||||| |||||||||  | ||||||||||||||||| |||||| ||| ||||||    
T  15999080 aaataaaattttttgtgagaatgaaaacaatcagttttattttttagggattaaaatcaaagttcgct 15999147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 26241524 - 26241570
Alignment:
Q  80 tgaggatgaaaacatcccgttttattttttagggactaaaataaaaa 126  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||    
T  26241524 tgaggatgaaaacatctcattttattttttagggattaaaataaaaa 26241570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 33005133 - 33005223
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttatttt-ttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    ||||||||||||||||| || | ||||||||| |||||||| ||||  ||||||   ||||| | |||||| |||||||||||||||||||    
T  33005133 tttgtgaggatgaaaacttctcattttatttttttagggacgaaaagcaaaatttaatatatttatagggacgaaaaacttatttaaccct 33005223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 33998663 - 33998569
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctat 167  Q
    |||||| ||||||||||||||| | |||| |||||||  ||| || ||| ||||||| |||||| | ||  || ||||||||||||||| |||||    
T  33998663 ttttttatgaggatgaaaacattcagtttaattttttcaggattagaatcaaaattctctatatttataatgacgaaaaacttatttaatcctat 33998569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 39187701 - 39187778
Alignment:
Q  84 gatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    |||||||||||| | ||||||||| ||  ||||||||| |||||||  ||||| | |||| | |||||||||||||||    
T  39187701 gatgaaaacatctcattttattttctaaagactaaaatcaaaattcattatatttataggaacgaaaaacttatttaa 39187778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 33998854 - 33998902
Alignment:
Q  80 tgaggatgaaaacatcccgttttattttttagggactaaaataaaaatt 128  Q
    ||||||| |||| ||| | ||||||||||||||||||||||| ||||||    
T  33998854 tgaggataaaaatatctcattttattttttagggactaaaatcaaaatt 33998902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 26032336 - 26032249
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    |||||||||||||||||||| | |||| |||||||||||| |||||| |||||||||||||| | |||||| ||||||||||||||||    
T  26032336 ttttgtgaggatgaaaacattcagtttaattttttagggattaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 26032249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 38445966 - 38446055
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    |||||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||| ||| | |||||| ||||||||||||||||||    
T  38445966 ttttgtgaggttgaaaacattcagtttaattttttagggactaaaatcaaaattcgctgtatttatagggatgaaaaacttatttaaccc 38446055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 40972117 - 40972209
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    |||||||||||||| ||||||| |  ||||||||||||||||||||||| |||||||| ||||| | |||||| |||||| ||||||||||||    
T  40972117 ttttttgtgaggataaaaacattctattttattttttagggactaaaatcaaaattcgttatatttatagggatgaaaaaattatttaaccct 40972209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 18258028 - 18258135
Alignment:
Q  60 aaaacaaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttattt 159  Q
    ||||||||  || |||||| ||||||||||||||| | |||| |||||||||||||||||||||||  || | |||| ||| |||| |||||||||||||    
T  18258028 aaaacaaaataatttttttatgaggatgaaaacattcagtttaattttttagggactaaaataaaagatcaccatatttttggggaggaaaaacttattt 18258127  T
Q  160 aaccctat 167  Q
    ||||||||    
T  18258128 aaccctat 18258135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 21034716 - 21034621
Alignment:
Q  70 aaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    ||||||||||||||| |||||||||| | ||||||||||| ||||||| ||| |||||| | ||||| | ||||||| ||||||||||||||||||    
T  21034716 aaattttttgtgagggtgaaaacatctcattttattttttggggactataatcaaaatttgatatatttatagggaacaaaaacttatttaaccct 21034621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 7630619 - 7630703
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    |||| |||||||||||||| | ||||||||||||||||||||||| |||||| | ||||| | ||| || |||||||||||||||    
T  7630619 ttgtaaggatgaaaacatctctttttattttttagggactaaaatcaaaatttgatatatttatagagacgaaaaacttatttaa 7630703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 36599920 - 36599845
Alignment:
Q  65 aaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatattt 140  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||| || |||| |||| ||||||| ||||||||||    
T  36599920 aaatggaatgttttgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaattcactatatattt 36599845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 36060759 - 36060829
Alignment:
Q  98 gttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctatt 168  Q
    |||| ||||||||||||||||||| ||||||| |||||| |||||  | ||||||||||||||||||||||    
T  36060759 gtttaattttttagggactaaaatcaaaattcactatatttttagaaacgaaaaacttatttaaccctatt 36060829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 41863732 - 41863822
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctat 167  Q
    ||||||||||||||||||| | ||||||||| ||| || |||||||||| || | ||||| |  ||||| |||||||||||||||||||||    
T  41863732 ttgtgaggatgaaaacatctcattttattttatagagattaaaataaaattttgatatatttacagggatgaaaaacttatttaaccctat 41863822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 32892431 - 32892512
Alignment:
Q  84 gatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    ||||||||||| |  ||||||||| ||| ||||||||| |||||||||||||| | ||  ||||||||||||||||||||||    
T  32892431 gatgaaaacattcaattttattttatagagactaaaatcaaaattcgctatatctataaagaagaaaaacttatttaaccct 32892512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 40971922 - 40971875
Alignment:
Q  81 gaggatgaaaacatcccgttttattttttagggactaaaataaaaatt 128  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||    
T  40971922 gaggatgaaaacatctcattttattttttagggactaaaatcaaaatt 40971875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 38445756 - 38445670
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    |||||||| |||||||||| | | |||||| |||||| ||||||||| |||||| | || || | |||||| |||||||||||||||    
T  38445756 ttttgtgacgatgaaaacagctcattttatattttagagactaaaatcaaaatttgatacatttatagggacgaaaaacttatttaa 38445670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 756924 - 756985
Alignment:
Q  80 tgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatattta 141  Q
    |||||||||||||||  ||||||||||||||| ||||||||| |||||| ||| ||| ||||    
T  756924 tgaggatgaaaacattgcgttttattttttagagactaaaatcaaaatttgctttattttta 756985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 30856367 - 30856452
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatt 158  Q
    |||||||  |||||||||||||||  ||| ||||||||||||  ||||  |||||||| ||||| |||||||| |||||| |||||    
T  30856367 ttttttggaaggatgaaaacatcctatttcattttttagggaacaaaaccaaaattcgttatatttttagggacgaaaaatttatt 30856452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 2301889 - 2301832
Alignment:
Q  105 tttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    |||||||||| |||||  |||||||||| ||| ||||| || ||||||||||||||||    
T  2301889 tttttagggattaaaaccaaaattcgctgtatttttagagacgaaaaacttatttaac 2301832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 17436526 - 17436473
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattc 129  Q
    ||||||| ||||||||||| | |||||||||||||| || |||||| |||||||    
T  17436526 tttgtgaagatgaaaacattcagttttattttttagagattaaaatcaaaattc 17436473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 38142437 - 38142372
Alignment:
Q  98 gttttattttttagggactaaaataaaaattcgctata-tatttagggaagaaaaacttatttaac 162  Q
    ||||||||||||| |||||||||| |||||| |||||| | |||| ||| ||||||||||| ||||    
T  38142437 gttttattttttaaggactaaaatcaaaatttgctatattttttatggatgaaaaacttatgtaac 38142372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 17947284 - 17947375
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| | ||||| | |||||| |||||| |||||||||||    
T  17947284 ttttttgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggatgaaaaatttatttaaccc 17947375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 51203307 - 51203221
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    |||||||||||||| ||| |  ||||||||||||||||||||||| ||||||||| |||| | |||||| |||||||||||||||||    
T  51203307 ttgtgaggatgaaagcattctattttattttttagggactaaaatcaaaattcgcaatatttatagggacgaaaaacttatttaacc 51203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 11692237 - 11692153
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    ||||||||||||||||||   |||| ||||||||| ||||||||| |||||||||||||| | |||||| |||||||||||||||    
T  11692237 ttgtgaggatgaaaacattaagtttaattttttagagactaaaatcaaaattcgctatatttatagggatgaaaaacttatttaa 11692153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 5521500 - 5521590
Alignment:
Q  76 tttgtgaggatgaaaacatcccgt----tttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    ||||||||||||||||||| | ||    ||||||||||| |||||||||| |||||||||||||| | |||||| ||||||||||||||||    
T  5521500 tttgtgaggatgaaaacattctgtatattttattttttaaggactaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 5521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 52131997 - 52131904
Alignment:
Q  74 tttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctat 167  Q
    ||||||||||||||||||||| |  ||| |||||||| |||||||||| |||||||| ||||| | |||||| | | |||||||||||||||||    
T  52131997 tttttgtgaggatgaaaacattcattttaattttttatggactaaaatcaaaattcgttatatttgtagggacggataacttatttaaccctat 52131904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 24789734 - 24789658
Alignment:
Q  80 tgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaactta 156  Q
    |||||||||||||| |||||||||||||||| |||||||||| ||| |||| ||||| |||| ||| ||||||||||    
T  24789734 tgaggatgaaaacaccccgttttattttttaaggactaaaatcaaatttcgttatatttttaaggacgaaaaactta 24789658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 24818525 - 24818601
Alignment:
Q  80 tgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaactta 156  Q
    |||||||||||||| |||||||||||||||| |||||||||| ||| |||| ||||| |||| ||| ||||||||||    
T  24818525 tgaggatgaaaacaccccgttttattttttaaggactaaaatcaaatttcgttatatttttaaggacgaaaaactta 24818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 31792710 - 31792623
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    ||||||||||||||||||  | |||||||||||||  |||||||| |||||| | ||||| | |||||| |||||| |||||||||||    
T  31792710 ttgtgaggatgaaaacatttcattttattttttagaaactaaaatcaaaatttgatatatttatagggacgaaaaatttatttaaccc 31792623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 44340962 - 44341044
Alignment:
Q  81 gaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    |||||| |||||| ||| ||||||||||||||||||||||| | |||||| ||| | |||  ||| |||||||||||||||||    
T  44340962 gaggattaaaacaaccctttttattttttagggactaaaatcagaattcgttatgttttttaggacgaaaaacttatttaacc 44341044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 33414298 - 33414378
Alignment:
Q  81 gaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    |||||||||||||  | ||||||||||||||||| |||||| |||||||||||||| ||||  | | |||||||||||||||    
T  33414298 gaggatgaaaacaatcagttttattttttagggattaaaatcaaaattcgctatat-tttaaagtataaaaacttatttaac 33414378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 38834058 - 38834114
Alignment:
Q  105 tttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    |||||| ||| |||||| |||||||| ||||| ||||||||||||||||||||||||    
T  38834058 tttttaaggattaaaattaaaattcgttatatttttagggaagaaaaacttatttaa 38834114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 2479010 - 2478935
Alignment:
Q  88 aaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    |||||||| | ||||| ||||||||||||||||| ||||||   ||||| | |||||| |||||||||||||||||    
T  2479010 aaaacatctcattttaatttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaacc 2478935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 4120127 - 4120216
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatat-ttagggaagaaaaacttatttaacc 163  Q
    |||||||||||||||||| ||| |  ||| | |||||||| ||||||||||||||||| ||||| | |||||  | ||||||||||||||||    
T  4120127 ttttttgtgaggatgaaagcattcaatttaaatttttaggaactaaaataaaaattcgttatatttattagg--acaaaaacttatttaacc 4120216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 15186933 - 15186857
Alignment:
Q  85 atgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    |||||||||| || |||||||| ||| | |||||||| ||| || | ||||| |||||||| |||||||||||||||    
T  15186933 atgaaaacatgccattttatttgttaagaactaaaatcaaactttgatatatttttagggacgaaaaacttatttaa 15186857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 15187101 - 15187147
Alignment:
Q  19 caacctttgtatgttcatattattatgttcaagaaatttccaaaaca 65  Q
    ||||| |||||||| |||||||||||||||||||||| || ||||||    
T  15187101 caacccttgtatgtccatattattatgttcaagaaatgtcaaaaaca 15187147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 41823622 - 41823536
Alignment:
Q  80 tgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacccta 166  Q
    ||||||| |||||||| | |||||| ||||| ||| |||||| |||||| | ||||| | |  ||| ||||||||||||||||||||    
T  41823622 tgaggataaaaacatctcattttatcttttaaggattaaaatcaaaatttgatatatttatgaggatgaaaaacttatttaacccta 41823536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 5521293 - 5521240
Alignment:
Q  80 tgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgcta 133  Q
    |||||||||||||||| | ||| ||||||||| |||| |||| |||||||||||    
T  5521293 tgaggatgaaaacatctcatttgattttttagagacttaaatcaaaattcgcta 5521240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 36620993 - 36620916
Alignment:
Q  85 atgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    ||||||||||| | |||||||||||||| |||||||| ||||||   ||||| | |||  | ||||||||||||||||    
T  36620993 atgaaaacatctcattttattttttaggaactaaaatcaaaatttaatatatttatagttacgaaaaacttatttaac 36620916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 38852038 - 38851974
Alignment:
Q  99 ttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    |||||||||||| ||| |||||| ||||||   ||||| ||||| || |||||||||||||||||    
T  38852038 ttttattttttaaggattaaaatcaaaatttattatatttttagagacgaaaaacttatttaacc 38851974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 35665414 - 35665323
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctat 167  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||| |||||||||||||| | || ||| |||||||||||||||||||||    
T  35665414 tttgtgaggatgaaaacattcactttaattttttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccctat 35665323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 7876250 - 7876157
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacccta 166  Q
    |||||||||||||||||||||| | |||| |||||||||||| | |||| |||||||  ||||| | ||||||| |||||||||||||||||||    
T  7876250 ttttttgtgaggatgaaaacattcagtttaattttttagggatttaaatcaaaattcattatatttatagggaataaaaacttatttaacccta 7876157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 17642612 - 17642687
Alignment:
Q  88 aaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    ||||||| | |||| |||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  17642612 aaaacattcagtttaattttttaaggactaaaatcaaaattcgctatatttttagggacgaaaaacttatttaacc 17642687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 12496852 - 12496939
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    |||||||||||||||||||||| | |||| |||||||||| |||||||| |||||||| ||||| | |||||| |||||| ||||||||    
T  12496852 ttttttgtgaggatgaaaacat-cggtttgattttttaggaactaaaatcaaaattcgttatatttatagggatgaaaaatttatttaa 12496939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 7693665 - 7693570
Alignment:
Q  65 aaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttattta 160  Q
    |||| |||||||| |||||||||||||||| | |||| ||||||| ||||||||||| ||||||| |||||| | |||| | ||||||| ||||||    
T  7693665 aaataaaatttttcgtgaggatgaaaacattcagtttaatttttttgggactaaaatcaaaattctctatatttataggaacgaaaaacatattta 7693570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 28191527 - 28191442
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    ||||||||||||||||||| | |||| ||||| || |||||||||| |||||||||||||| | ||||||  ||||||||| ||||    
T  28191527 tttgtgaggatgaaaacattcagtttaattttgtacggactaaaatcaaaattcgctatatttatagggacaaaaaacttaattaa 28191442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 12926593 - 12926506
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    ||||||||||||||||| | | |||||||||| |||||| ||||| |||||||  ||||| | ||| || ||||||||||||||||||    
T  12926593 ttgtgaggatgaaaacaactcattttatttttcagggacgaaaatcaaaattcaatatatttatagtgatgaaaaacttatttaaccc 12926506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 578291 - 578206
Alignment:
Q  83 ggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatat-attta--ggga-agaaaaacttatttaaccc 164  Q
    ||||||||||||| | ||||||||||||||||||||||| |||||| ||||||| |||||  |||| | |||||||||||||||||    
T  578291 ggatgaaaacatctcattttattttttagggactaaaatcaaaatttgctatattatttatagggataaaaaaacttatttaaccc 578206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 24895732 - 24895822
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    ||||| ||| |||||||||| |  ||||||||| ||||||||||||| |||||| | ||||| | || ||| |||||||||||||||||||    
T  24895732 ttttgcgagaatgaaaacattcaattttattttgtagggactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaaccct 24895822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 35665584 - 35665631
Alignment:
Q  74 tttttgtgaggatgaaaacatcccgttttattttttagggactaaaat 121  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||||    
T  35665584 tttttgtgaggatgaaaacatctcattttagtttttagggactaaaat 35665631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 40948936 - 40948869
Alignment:
Q  97 cgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    ||||||||||| || ||||||||||||||||| | ||||| | ||||||  |||||||||||||||||    
T  40948936 cgttttattttatatggactaaaataaaaatttgttatatttatagggataaaaaacttatttaaccc 40948869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 43281658 - 43281564
Alignment:
Q  69 gaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    |||| |||||||||||||||||||||   ||||||||||||| ||| | || | ||||| | |||||| | |||||| ||||||||||||||||||    
T  43281658 gaaaatttttgtgaggatgaaaacattatgttttatttttta-ggattgaagtcaaaatccactatatttgtagggacgaaaaacttatttaaccc 43281564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 578463 - 578548
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    |||||||||||| ||||| |  ||||||||||||||||||||||| ||||||| ||| || | || ||| | |||||||||||||||    
T  578463 ttgtgaggatgacaacattctattttattttttagggactaaaatcaaaattcactacatttatatggacg-aaaacttatttaacc 578548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 654222 - 654320
Alignment:
Q  60 aaaacaaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatt 158  Q
    ||||||||  || ||| |||||||||||||||||| | |||| | |||||| ||| ||||||||||||| | ||||| | |||| | ||||||||||||    
T  654222 aaaacaaaataattttattgtgaggatgaaaacatacggtttaactttttatggattaaaataaaaatttgttatatttataggaacgaaaaacttatt 654320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 35652112 - 35652178
Alignment:
Q  100 tttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacccta 166  Q
    ||||||||||||  |||||||| |||||| | ||||| | |||||| ||||||||||||||||||||    
T  35652112 tttattttttagaaactaaaattaaaatttgatatatttatagggatgaaaaacttatttaacccta 35652178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 10439591 - 10439507
Alignment:
Q  81 gaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacccta 166  Q
    |||||||||||||||  |||||| | |||| |||||||||  |||||||| ||||| |||||||   |||||||||||||||||||    
T  10439591 gaggatgaaaacatcatgttttactctttatggactaaaaataaaattcgttatatttttaggg-ccaaaaacttatttaacccta 10439507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 1944172 - 1944228
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgcta 133  Q
    ||||||||||||||| |||  |||| ||||||||| ||||||||| |||||||||||    
T  1944172 ttgtgaggatgaaaatatcatgtttaattttttagagactaaaatcaaaattcgcta 1944228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 20140910 - 20140822
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    |||||||||||||||| | | ||||||||||| || |||||||||| |||||| | ||||| | ||| ||  |||| ||||||||||||    
T  20140910 tttgtgaggatgaaaatacctcgttttattttataaggactaaaattaaaatttgttatatttatagagacaaaaatcttatttaaccc 20140822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 25954749 - 25954800
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaat 127  Q
    |||||||||||||||||||| | |||||||||||||  |||||||| |||||    
T  25954749 tttgtgaggatgaaaacatctcattttattttttagaaactaaaatcaaaat 25954800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 25954541 - 25954507
Alignment:
Q  60 aaaacaaatgaaattttttgtgaggatgaaaacat 94  Q
    ||||||||| |||||||||||||||||||||||||    
T  25954541 aaaacaaattaaattttttgtgaggatgaaaacat 25954507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 28191733 - 28191826
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctattt 169  Q
    ||||||||||||||||||||| | ||||||||| ||  || |||||| |||||| | ||||| | || | || ||||| ||||||||||||||||    
T  28191733 ttttgtgaggatgaaaacatctcattttattttgtaaagattaaaatcaaaatttgatatatttata-gaaaaaaaaaattatttaaccctattt 28191826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 7876443 - 7876533
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctattt 169  Q
    ||||||||||||| ||||| | |||   |||||||||| |||||| |||||||  ||||| | || ||| |||||| ||||||||||||||||    
T  7876443 ttgtgaggatgaacacatctcattta--tttttagggattaaaatcaaaattcattatatttataaggacgaaaaatttatttaaccctattt 7876533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 20141064 - 20141125
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatat 136  Q
    ||||||||| ||||| |||| |  ||| ||||||||||||||||||| || |||||||||||    
T  20141064 ttttgtgagaatgaagacattctttttaattttttagggactaaaatcaatattcgctatat 20141125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 27002997 - 27003062
Alignment:
Q  99 ttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    |||||||||||||||||||||||  ||||| |  |||| | |||||| |||| |||||||||||||    
T  27002997 ttttattttttagggactaaaatccaaatttgacatatttatagggacgaaacacttatttaaccc 27003062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 34196848 - 34196913
Alignment:
Q  99 ttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 164  Q
    |||||||||||||| | || ||| |||||||||||||| | |||||| | ||| ||||||||||||    
T  34196848 ttttattttttaggaaatataatcaaaattcgctatatttatagggatggaaagcttatttaaccc 34196913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 37149264 - 37149211
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaatt 128  Q
    ||||| ||||||||| |||||| |||||||||||||| || |||||| ||||||    
T  37149264 ttttgcgaggatgaacacatcctgttttattttttagagattaaaatcaaaatt 37149211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 33261970 - 33262066
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctattt 169  Q
    |||||| | ||||||||||||| | |||| ||||||||||||||||||| |||||| ||||||| | |||| | ||||||||||||| |||||||||    
T  33261970 tttttttttaggatgaaaacattcagtttaattttttagggactaaaatcaaaattagctatatttataggaacgaaaaacttatttgaccctattt 33262066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 33282129 - 33282225
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctattt 169  Q
    |||||| | ||||||||||||| | |||| ||||||||||||||||||| |||||| ||||||| | |||| | ||||||||||||| |||||||||    
T  33282129 tttttttttaggatgaaaacattcagtttaattttttagggactaaaatcaaaattagctatatttataggaacgaaaaacttatttgaccctattt 33282225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 14398077 - 14397986
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctat 167  Q
    ||||||||||||||||||| | |||| |||||||||| |||||||| |||||| | ||||| | || ||| |||||||||||||||||||||    
T  14398077 tttgtgaggatgaaaacattcagtttaattttttaggaactaaaatcaaaattagttatatttatatggatgaaaaacttatttaaccctat 14397986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 1691537 - 1691626
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    |||||| | ||||||||||||| | |||| ||||||||| ||||||||| |||||||||||||| | |||||| ||||||| ||||||||    
T  1691537 tttttttttaggatgaaaacattcagtttaattttttagagactaaaatcaaaattcgctatatttatagggacgaaaaacctatttaac 1691626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 27086249 - 27086339
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacccta 166  Q
    ||||||||||||||||||| | |||| |||||||| |||||||||| | |||| | ||||| | || ||| ||||||||||||||||||||    
T  27086249 tttgtgaggatgaaaacattcagtttaattttttaaggactaaaatcagaatttgttatatttataaggatgaaaaacttatttaacccta 27086339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 1691390 - 1691294
Alignment:
Q  70 aaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacccta 166  Q
    ||||||||||||| |||||||||||| | |||||  |||||||||||||||| ||| ||   | ||| | |||||| ||||||||||||||||||||    
T  1691390 aaattttttgtgaagatgaaaacatctcattttacattttagggactaaaatcaaattttaatgtatctatagggacgaaaaacttatttaacccta 1691294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 33261793 - 33261690
Alignment:
Q  60 aaaacaaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttattt 159  Q
    |||| ||| ||| |||||| | |||||||||||||| | ||||||||||||||||||||||| |||||| | ||| | | || ||| |||||||||||||    
T  33261793 aaaataaaagaattttttttttaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttattt 33261695  T
Q  160 aaccc 164  Q
    |||||    
T  33261694 aaccc 33261690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 33281952 - 33281849
Alignment:
Q  60 aaaacaaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttattt 159  Q
    |||| ||| ||| |||||| | |||||||||||||| | ||||||||||||||||||||||| |||||| | ||| | | || ||| |||||||||||||    
T  33281952 aaaataaaagaattttttttttaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttattt 33281854  T
Q  160 aaccc 164  Q
    |||||    
T  33281853 aaccc 33281849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 10840483 - 10840535
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaatt 128  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  10840483 ttttgtgaggatgaaaacatcccgtttta-tttttaaggactaaaatcaaaatt 10840535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 21722927 - 21723003
Alignment:
Q  60 aaaacaaatgaaattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatat 136  Q
    |||| |||||||||||||||| ||| ||||| ||||| | |||||||| |||||| ||||||||||| ||| |||||    
T  21722927 aaaaaaaatgaaattttttgtaaggttgaaagcatccagctttattttatagggattaaaataaaaaatcgttatat 21723003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 14520839 - 14520913
Alignment:
Q  87 gaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    ||||||||  |||||||||||| | |||||||||| |||||||||||||  |||||  | ||||||||||||||||    
T  14520839 gaaaacatatcgttttattttt-atggactaaaatcaaaattcgctataattttagaaacgaaaaacttatttaac 14520913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 27086043 - 27085997
Alignment:
Q  76 tttgtgaggatgaaaacatcccgtttt-attttttagggactaaaat 121  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||    
T  27086043 tttgtgaggatgaaaacatctcatttttattttttagggactaaaat 27085997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 42053665 - 42053711
Alignment:
Q  98 gttttattttttagggactaaaataaaaattcgctatatatttaggg 144  Q
    ||||||||||||||| |||||||||||||||| |||||  |||||||    
T  42053665 gttttattttttaggaactaaaataaaaattcactataattttaggg 42053711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 46644548 - 46644598
Alignment:
Q  113 gactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    ||||||||| |||||||| |||||| ||| ||| |||||||||||||||||    
T  46644548 gactaaaattaaaattcgttatatacttaaggacgaaaaacttatttaacc 46644598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 9117470 - 9117558
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    |||||||||||||||||| || | | ||| |||||||| | |||||||| |||||| | ||||| | ||||||  |||||||||||||||    
T  9117470 ttttttgtgaggatgaaa-cacctcatttaattttttaagaactaaaatcaaaatttgttatatttatagggacaaaaaacttatttaac 9117558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 7435462 - 7435383
Alignment:
Q  83 ggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    ||||||||||||  |||||||||||||||||| |||| |  |||||| |||||| |||| |||  ||||| ||||||||||    
T  7435462 ggatgaaaacatatcgttttattttttagggattaaagt-caaattcactatatttttaaggacaaaaaatttatttaacc 7435383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 14398273 - 14398361
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    |||||| |||||||||||||||| | |||||||| ||||  |||||||| |||||| | ||||| |  | ||| ||||||||| |||||    
T  14398273 ttttttatgaggatgaaaacatctcattttatttgttagaaactaaaatcaaaatttgatatatttacatggacgaaaaacttttttaa 14398361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 3014543 - 3014630
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaag-aaaaacttatttaac 162  Q
    ||||||||||| |||||||| | |||||||||||||| | |||||||||||||| |||||| | |||||| | |||||||||||||||    
T  3014543 tttgtgaggataaaaacatcacattttattttttaggaattaaaataaaaattcactatatttatagggatgaaaaaacttatttaac 3014630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 12754111 - 12754021
Alignment:
Q  77 ttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctat 167  Q
    |||||||||  ||||||| |  ||| ||||| |||  |||||||| ||||||||||| || |||| ||| |||||||||||||||||||||    
T  12754111 ttgtgaggacaaaaacattctatttaattttatagaaactaaaatcaaaattcgctaaatttttaaggacgaaaaacttatttaaccctat 12754021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 1112024 - 1112101
Alignment:
Q  82 aggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttattt 159  Q
    |||||||||||||| | ||| |||||||||||| |||||| |||||  | ||||| | |||||| |||||||||||||    
T  1112024 aggatgaaaacatctcatttaattttttagggattaaaattaaaatatgatatatttatagggacgaaaaacttattt 1112101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 3014363 - 3014314
Alignment:
Q  72 attttttgtgaggatgaaaacatcccgttttattttttagggactaaaat 121  Q
    ||||||||||||||||||||||| |  |||||||||||| ||||||||||    
T  3014363 attttttgtgaggatgaaaacattctattttattttttaaggactaaaat 3014314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 4096768 - 4096853
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaa 161  Q
    ||||||| |||||||||||| | ||| |||||||||||| |||||| |||||| | | ||| | |||||| |||||| ||||||||    
T  4096768 tttgtgatgatgaaaacatctcatttaattttttagggattaaaatcaaaatttgatttatttatagggacgaaaaatttatttaa 4096853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 353359 - 353299
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatat 136  Q
    ||||||| ||||||||| ||  |||||||||||||||||  ||||| |||||||| |||||    
T  353359 tttgtgacgatgaaaacttcatgttttattttttagggatcaaaatcaaaattcgttatat 353299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 23757374 - 23757284
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacccta 166  Q
    |||||||||||||||||||| | |||||||||||||||| |||||| |||||| ||||||| | ||  || |||||||| |||| ||||||    
T  23757374 tttgtgaggatgaaaacatctcattttattttttagggattaaaattaaaatttgctatatttataaagatgaaaaactgatttgacccta 23757284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 15249582 - 15249670
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    ||||||||||||||||||||| | ||||||||||||| ||| ||||| |||||| | ||| | | |||||| ||||| |||||||||||    
T  15249582 ttttgtgaggatgaaaacatctcattttattttttagtgacgaaaatcaaaatttgatatgtttatagggatgaaaagcttatttaacc 15249670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 23757574 - 23757666
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatt-tagggaagaaaaacttatttaaccc 164  Q
    ||||||| ||| |||| ||||| | |||| |||||||| |||||||||| ||||||| |||||| || |||||| ||||||||||||||||||    
T  23757574 ttttttgcgagtatgacaacattctgtttaattttttacggactaaaatcaaaattcactatattttatagggacgaaaaacttatttaaccc 23757666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 33657592 - 33657656
Alignment:
Q  99 ttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    ||||| |||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||||||||    
T  33657592 ttttactttttaggaactaaaatcaaaattcgctatatttttaaggacgaaaaatttatttaacc 33657656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 158792 - 158693
Alignment:
Q  75 ttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc-tatttaata 173  Q
    ||||||| ||||||||||||| | ||||||||||||||||| ||||  |||||| | ||||| |  |  || |||||||||||||||||| |||||||||    
T  158792 ttttgtgtggatgaaaacatctcattttattttttagggaccaaaaccaaaatttgatatatttacatagacgaaaaacttatttaacccatatttaata 158693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 158962 - 159025
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatat 136  Q
    ||||||||| |||||||||||| |  ||| |||||| ||||||||||||||||||||| |||||    
T  158962 ttttttgtgtggatgaaaacattcaatttaatttttaagggactaaaataaaaattcgttatat 159025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 22210238 - 22210321
Alignment:
Q  80 tgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacc 163  Q
    ||||||||||||||| |  |||||||| ||| ||| |||||| |||||||| ||||| | || ||| |||||||||||||||||    
T  22210238 tgaggatgaaaacattctattttatttgttaaggaataaaatcaaaattcgttatatttataaggatgaaaaacttatttaacc 22210321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 36129128 - 36129209
Alignment:
Q  85 atgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaacccta 166  Q
    ||||||| ||| | ||||||||||||| | ||||| | |||||||  ||||| | ||||||| |||||||||||||||||||    
T  36129128 atgaaaatatctcattttattttttagaggctaaagtcaaaattctttatatgtgtagggaaaaaaaacttatttaacccta 36129209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 33757954 - 33757871
Alignment:
Q  82 aggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    |||||||||||||| | ||| |||||| |  ||||||||| ||||||   ||||| | |||||| |||||||||||||||||||    
T  33757954 aggatgaaaacatctcatttcatttttgaaagactaaaatcaaaatttaatatatttatagggatgaaaaacttatttaaccct 33757871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 36128692 - 36128635
Alignment:
Q  71 aattttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaatt 128  Q
    ||||| || |||||||||||||||| |||||||||||||| |||  ||||| ||||||    
T  36128692 aatttcttatgaggatgaaaacatctcgttttattttttaaggatcaaaatcaaaatt 36128635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 5986721 - 5986785
Alignment:
Q  98 gttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaac 162  Q
    ||||||||| ||  |||||||||| |||||| | ||||| ||||| |||||||||||||| ||||    
T  5986721 gttttatttgtttaggactaaaattaaaatttgttatatttttagagaagaaaaacttatgtaac 5986785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 13515626 - 13515721
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctattt 169  Q
    ||||||||||  |||||||||||   |||||| |||||||||||||||| |||||| | ||||| | || ||| | ||| ||||||||| |||||||    
T  13515626 ttttttgtgactatgaaaacatctaattttatattttagggactaaaattaaaatttgatatatttataaggacg-aaatcttatttaatcctattt 13515721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 13605159 - 13605254
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccctattt 169  Q
    ||||||||||  |||||||||||   |||||| |||||||||||||||| |||||| | ||||| | || ||| | ||| ||||||||| |||||||    
T  13605159 ttttttgtgactatgaaaacatctaattttatattttagggactaaaattaaaatttgatatatttataaggacg-aaatcttatttaatcctattt 13605254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 22210046 - 22209994
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaatt 128  Q
    |||||||||||||||||||| | |||||| ||||||| || ||||| ||||||    
T  22210046 tttgtgaggatgaaaacatctcattttatcttttaggaacaaaaatcaaaatt 22209994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 33758114 - 33758206
Alignment:
Q  73 ttttttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    ||||||||||| |||||||||| |  ||| || ||| || ||||||||| |||||||  ||||| | ||| || |||||| ||||||||||||    
T  33758114 ttttttgtgagaatgaaaacattcaatttaatatttaagagactaaaatcaaaattcattatatttatagagatgaaaaatttatttaaccct 33758206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 707 - 796
Alignment:
Q  76 tttgtgaggatgaaaacatcccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 165  Q
    ||||||| |||||||||| | | || ||||||||||||| |||||| |||||| | ||||| | |||||| |||||| ||||||||||||    
T  707 tttgtgatgatgaaaacaactcattatattttttagggaataaaattaaaatttgttatatttatagggacgaaaaatttatttaaccct 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University